Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0985
         (520 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006722-5|AAK68410.3|  703|Caenorhabditis elegans Hypothetical ...    30   1.1  
AC006645-10|AAF39849.1|  746|Caenorhabditis elegans Hypothetical...    30   1.1  
U41546-1|AAC48219.1|   96|Caenorhabditis elegans Hypothetical pr...    27   6.1  

>AC006722-5|AAK68410.3|  703|Caenorhabditis elegans Hypothetical
           protein Y19D10A.10 protein.
          Length = 703

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 16/60 (26%), Positives = 32/60 (53%)
 Frame = +1

Query: 340 LWFMSVYXIFTHVYYTTFKIFLEILILIH*QDDSRLYKKQSSKPGNIIQXSKXLSVIADP 519
           L + S+Y +F  + +  F +F      I  +DD ++Y+K++ K     + S+ L++  DP
Sbjct: 446 LGWRSIYYLFGGLTFIMFIVFW-----ISYKDDPKMYRKRNLKKSPAAKLSRYLAICTDP 500


>AC006645-10|AAF39849.1|  746|Caenorhabditis elegans Hypothetical
           protein F56A4.11 protein.
          Length = 746

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 16/60 (26%), Positives = 32/60 (53%)
 Frame = +1

Query: 340 LWFMSVYXIFTHVYYTTFKIFLEILILIH*QDDSRLYKKQSSKPGNIIQXSKXLSVIADP 519
           L + S+Y +F  + +  F +F      I  +DD ++Y+K++ K     + S+ L++  DP
Sbjct: 489 LGWRSIYYLFGGLTFIMFIVFW-----ISYKDDPKMYRKRNLKKSPAAKLSRYLAICTDP 543


>U41546-1|AAC48219.1|   96|Caenorhabditis elegans Hypothetical
           protein T25B6.4 protein.
          Length = 96

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = +2

Query: 149 DVIGIHVVFYHTQRNT*LRYTHVKCAN 229
           + +G++ +FYH  R   ++  H  C N
Sbjct: 65  EYLGVYAIFYHRSRTELMKLLHEMCPN 91


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,662,245
Number of Sequences: 27780
Number of extensions: 212917
Number of successful extensions: 448
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 448
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1007108110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)