Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0985
         (520 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g75990.1 68414.m08824 26S proteasome regulatory subunit S3, p...    28   4.3  
At1g20200.1 68414.m02524 26S proteasome regulatory subunit S3, p...    28   4.3  

>At1g75990.1 68414.m08824 26S proteasome regulatory subunit S3,
           putative (RPN3) similar to 26S proteasome regulatory
           subunit S3 SP:P93768 [Nicotiana tabacum (Common
           tobacco)]
          Length = 487

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +1

Query: 76  YSTNVKRLVFG-RVALCLRVYIEIVRCYRY 162
           YSTN  +  F  R+A CL ++ E VR  R+
Sbjct: 422 YSTNEPQTAFNSRIAFCLNMHNEAVRALRF 451


>At1g20200.1 68414.m02524 26S proteasome regulatory subunit S3,
           putative (RPN3) similar to SP:Q06364 from [Daucus
           carota]
          Length = 488

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +1

Query: 76  YSTNVKRLVFG-RVALCLRVYIEIVRCYRY 162
           YSTN  +  F  R+A CL ++ E VR  R+
Sbjct: 423 YSTNEPQTAFNSRIAFCLNMHNEAVRALRF 452


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,625,633
Number of Sequences: 28952
Number of extensions: 182367
Number of successful extensions: 299
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 294
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 299
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 947539968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)