Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0984
         (561 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    77   2e-15
SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1 |Schizosa...    27   1.4  
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom...    25   5.8  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 76.6 bits (180), Expect = 2e-15
 Identities = 42/106 (39%), Positives = 57/106 (53%), Gaps = 1/106 (0%)
 Frame = +2

Query: 245 PTNNNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAG 424
           P  NN  F              + E G G G TVYPPLSS  +H G ++DLAI SL L G
Sbjct: 102 PRVNNFTFWLLPPALMLLLISALTEEGPGGGWTVYPPLSSITSHSGPAIDLAILSLQLTG 161

Query: 425 ISSIIGAXNYITTXXNIRLXNISFDPIP-YXLSCMDSSXFIILSLP 559
           ISS +G+ N I T  N+R   +S   +P +  + M +S  ++L+LP
Sbjct: 162 ISSTLGSVNLIATMINMRAPGLSLYQMPLFAWAIMITSILLLLTLP 207



 Score = 50.0 bits (114), Expect = 2e-07
 Identities = 28/72 (38%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
 Frame = +3

Query: 81  ELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 254
           EL  PGS  L G+ Q+YN  ++AH                  N LVPL++GAPD+A+PR+
Sbjct: 45  ELSAPGSQFLSGNGQLYNVAISAHGILMIFFFIIPALFGAFGNYLVPLMIGAPDVAYPRV 104

Query: 255 II*DFDSYPPPL 290
               F   PP L
Sbjct: 105 NNFTFWLLPPAL 116


>SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +2

Query: 356 LSSNIAHRGRSVDLAIFSLHLAGISSIIGAXNY 454
           ++ NI + GRS  + +  L +AGIS I  A +Y
Sbjct: 109 VAPNIYYMGRSSVINVGGLRIAGISGIYSAMDY 141


>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 762

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +1

Query: 271 TPTPLPYIINFKKNCRKWCRNRMNS 345
           T T   YIINFKKN   + R +++S
Sbjct: 512 TKTTEEYIINFKKNSWLFFRKKIDS 536


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,728,620
Number of Sequences: 5004
Number of extensions: 27015
Number of successful extensions: 48
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)