Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0983
         (580 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC428.01c |nup107|SPBC582.11c|nucleoporin Nup107|Schizosacchar...    28   1.1  
SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8 |Schizo...    27   1.5  
SPAC27E2.12 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        25   8.0  
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     25   8.0  

>SPBC428.01c |nup107|SPBC582.11c|nucleoporin
           Nup107|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 794

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = +3

Query: 168 SDIIQL-KLYKIIVSVSFMFVMMYIKLNVFFLRPLNLHTVYLKILT*PTK 314
           S+ +QL K Y + ++ + +  + Y+   V  + P  +HTVYLK +  P +
Sbjct: 510 SEQLQLAKKYSLDINHAALLAVEYVYDEVVSVSPEEVHTVYLKSIEEPVE 559


>SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 569

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +2

Query: 224 CYDVYKIKCFFFKTVESTHCLFENFNITYK 313
           C+D Y+ K +  + + +  CL E FN+ Y+
Sbjct: 324 CFDTYRAKFYIAELLVALECLHE-FNVIYR 352


>SPAC27E2.12 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 76

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 203 RKCIFYVCYDVYKIKCF 253
           R  IF VCY +Y + CF
Sbjct: 23  RGAIFLVCYPLYCVVCF 39


>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = +3

Query: 174 IIQLKLYKIIVSVSFMFVMMYIKLNVFFLRPLNLHTVYLKILT*PTKWHNFSL 332
           ++ +   KI+V   FMF +  + +   +  P   HT YL         HNFSL
Sbjct: 626 LLSINQLKIVVGSLFMFTICNLLMYYLYGSPFLEHT-YLYHFGRTDHRHNFSL 677


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,951,150
Number of Sequences: 5004
Number of extensions: 35316
Number of successful extensions: 64
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)