Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0983
         (580 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1308| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-29)                  29   2.1  
SB_22756| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_25369| Best HMM Match : HEAT (HMM E-Value=3.9e-05)                  28   4.8  
SB_12942| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.8  

>SB_1308| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-29)
          Length = 352

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +3

Query: 132 HCVR*HYC*TLCSDIIQLKLYKIIVSVSFMFVMMYIKLNVFFL 260
           HC+R H        I++ K  K+   +  +FVM Y+   + FL
Sbjct: 227 HCMRRHSTNKRRQTIVERKFIKMTFMIMVLFVMCYLPYQIVFL 269


>SB_22756| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 206

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = -1

Query: 340 DLIRLKLCHFVGY-VKIFK*TVCRFNGLK 257
           D++ + LC+F GY + I K  +C F G +
Sbjct: 169 DIMNIALCYFTGYRIDIMKMALCYFTGYR 197


>SB_25369| Best HMM Match : HEAT (HMM E-Value=3.9e-05)
          Length = 415

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +2

Query: 101 HDTRPDCAMFTLCSMTLLL 157
           HDTRP+C    LC+++ LL
Sbjct: 273 HDTRPECKYLYLCALSHLL 291


>SB_12942| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 315

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
 Frame = +2

Query: 107 TRPDCAMFTLCSMTLLLDVMF*YYSIETVQNNRKC--IFYVCYDVYKIKCFFFKTVESTH 280
           T+   A+ ++C MT+   V +  Y   T++N   C  +   C DV      F + + S H
Sbjct: 8   TQISLAVISMCGMTMNALVCYIVYKHRTMRNYTNCLVVSLACSDVIMAAVLFCQYLISFH 67

Query: 281 CLFENFNITYKMA 319
               + NI Y +A
Sbjct: 68  SPTAS-NILYAIA 79


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,028,679
Number of Sequences: 59808
Number of extensions: 249067
Number of successful extensions: 439
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 439
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1385833362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)