Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0983
         (580 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       24   0.94 
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   5.0  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         21   6.7  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    21   6.7  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    21   6.7  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 24.2 bits (50), Expect = 0.94
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 294 ILT*PTKWHNFSLIRSLVTFS*NSILKLICKY 389
           ++  PT+     + + +V FS NSILK +  Y
Sbjct: 277 VIVSPTRELTIQIWQQIVKFSLNSILKTVVAY 308


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 318 HNFSLIRSLVTFS*NSIL 371
           H F L+R L+ F  +SIL
Sbjct: 245 HFFDLVRPLIAFKFHSIL 262


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 136 VFDDIIVRRYVLILFN 183
           +FD  I R Y+L+L N
Sbjct: 368 IFDRYINREYILVLSN 383


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 136 VFDDIIVRRYVLILFN 183
           +FD  I R Y+L+L N
Sbjct: 368 IFDRYINREYILVLSN 383


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 136 VFDDIIVRRYVLILFN 183
           +FD  I R Y+L+L N
Sbjct: 368 IFDRYINREYILVLSN 383


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,161
Number of Sequences: 438
Number of extensions: 2601
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16748661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)