Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0983
         (580 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g61140.1 68414.m06888 SNF2 domain-containing protein / helica...    27   6.8  
At3g45070.1 68416.m04858 sulfotransferase family protein similar...    27   9.0  

>At1g61140.1 68414.m06888 SNF2 domain-containing protein / helicase
            domain-containing protein / zinc finger protein-related
            similar to ATPase [Homo sapiens] GI:531196; contains Pfam
            profiles PF00271: Helicase conserved C-terminal domain,
            PF00176: SNF2 family N-terminal domain, PF00097: Zinc
            finger, C3HC4 type (RING finger)
          Length = 1287

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +2

Query: 221  VCYDVYKIKCFFFK-TVESTHCLFENFNITYKMAQL*SNKVISD 349
            VC  V+  +C + + T +S HC F N N+   ++ L S   + D
Sbjct: 1007 VCGHVFCKQCIYERLTGDSNHCPFANCNVRLTISSLSSKTRLDD 1050


>At3g45070.1 68416.m04858 sulfotransferase family protein similar to
           steroid sulfotransferase 3 [Brassica napus] GI:3420008,
           steroid sulfotransferase 1 [Brassica napus] GI:3420004;
           contains Pfam profile PF00685: Sulfotransferase domain
          Length = 323

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -1

Query: 265 GLKKKTFNFIYIITNIKDTLTIILYSF 185
           GLK  T   +YI  N+KDTL    + F
Sbjct: 144 GLKGSTCKIVYISRNVKDTLVSYWHFF 170


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,632,720
Number of Sequences: 28952
Number of extensions: 163084
Number of successful extensions: 242
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 242
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1131744440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)