Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0980
         (644 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00006CAA4C Cluster: hypothetical protein TTHERM_0032...    33   7.8  

>UniRef50_UPI00006CAA4C Cluster: hypothetical protein
           TTHERM_00329950; n=1; Tetrahymena thermophila SB210|Rep:
           hypothetical protein TTHERM_00329950 - Tetrahymena
           thermophila SB210
          Length = 316

 Score = 32.7 bits (71), Expect = 7.8
 Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
 Frame = -2

Query: 346 SPINLDNLLNGDFNYNLFCFQA*IIYTTTEAL*WTFKELNISKNPTVIKIKSNELLLCGR 167
           +P   DN  NG  NY L+   + + +T  + + W     N S+ PT  +  S  ++    
Sbjct: 199 NPSYTDNFSNGYHNYALYWMPSYVAWTIDDVVYW--NSTNSSQYPTPWRCSSFRIIFRTD 256

Query: 166 NRQE--FGTHYS*KNSVRLSSRVTNL 95
           N Q    G H++   S++  S+ T L
Sbjct: 257 NGQSTASGDHFAYIQSIQYISKATYL 282


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 469,146,373
Number of Sequences: 1657284
Number of extensions: 7192247
Number of successful extensions: 10369
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 10148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10369
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 48541014171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)