Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0980
         (644 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0596 + 34964109-34964189,34964286-34964481,34964567-349647...    27   9.7  

>03_06_0596 +
           34964109-34964189,34964286-34964481,34964567-34964775,
           34964868-34964970,34965053-34965227,34965617-34965883,
           34965966-34966311,34966396-34966533,34966645-34966770,
           34966866-34967078,34967171-34967462,34967559-34967755,
           34967844-34968194,34968290-34968874
          Length = 1092

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +1

Query: 331 LSLSVNNHFV**YDYNNGNNCVNVFLFLSVIVFDRTIIEENAFC 462
           + +  +NH    Y Y  G  C+  F +++ IV+  T I   A+C
Sbjct: 839 IEIFFSNHCPLWYGYGGGLKCLERFSYINSIVYPWTSIPLLAYC 882


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,862,700
Number of Sequences: 37544
Number of extensions: 170749
Number of successful extensions: 174
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)