Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0979
         (614 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb...    29   0.53 
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch...    29   0.53 
SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8 |Schizo...    27   1.6  
SPBC19F8.06c |meu22||amino acid permease, unknown 11|Schizosacch...    27   2.2  
SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|c...    25   6.6  
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc...    25   8.7  
SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca...    25   8.7  

>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 29.1 bits (62), Expect = 0.53
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
 Frame = +2

Query: 86  ENKVDELPDLDNLLQCPVCYE-IPTGHIFQCNEGHNVCGRC----KVRLSVCPVCRA 241
           + K+  L  LD+ L+C +C+E      I  C+  H  C  C         +CP CRA
Sbjct: 14  QTKIPSLKGLDSSLRCLICHEYFRAPLITSCS--HTFCSFCIRDYLREHPMCPACRA 68


>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1133

 Score = 29.1 bits (62), Expect = 0.53
 Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = +2

Query: 92  KVDELPDLDNLL-QCPVCYEIPTGHIFQCNEGHNVCGRC 205
           K+D L   + L+ +CP+C   P  +    N  H  CG C
Sbjct: 863 KIDTLKSFEALITECPICCNEPIQNPLLLNCKHACCGDC 901


>SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 569

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +1

Query: 316 GGKVTRGLLASDSSSTPARDSGSDNAEYLGEDENNDNQNSVV 441
           G   TRGL  S  SST +R S  + +    ED+ +  Q++VV
Sbjct: 24  GSSFTRGLKNSTLSSTSSRKSSDEKSRKSSEDKRSP-QSTVV 64


>SPBC19F8.06c |meu22||amino acid permease, unknown
           11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = -1

Query: 359 LLLSEANNPLVTFPPNLKALSFRTFAMSSSMA*FLFQKIVPC-IPGRQKAE 210
           L  SEA NP  T P  +K + +R F +   +A F+   +VP  +PG + ++
Sbjct: 272 LAASEAKNPQKTVPAAVKQIFWRIF-LFYIVALFMLTLVVPSDLPGLRTSD 321


>SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 279

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +2

Query: 89  NKVDELPDLDNLLQCPVCY 145
           N +  + + D+ ++CPVCY
Sbjct: 156 NNLQRIEEPDDFVECPVCY 174


>SPAC25A8.01c ||snf2SR|fun thirty related protein
           Fft3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 922

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 310 KLGGKVTRGLLASDSSSTPARDSG 381
           +LGGK+ RG+ A   S+T   D G
Sbjct: 329 QLGGKIQRGIEAWGLSNTATSDEG 352


>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
           catalytic subunit Arm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 811

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
 Frame = +2

Query: 65  YIMSEIVENKVDELPDLDNLLQ--CPVCYEIPTGHIFQCNEGH 187
           Y++S+  EN+V++   L  L +    + +E PTG+I  C E H
Sbjct: 120 YLLSKKSENEVEQRL-LKALAEKTAKLIFEKPTGYIDSCEEFH 161


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,341,061
Number of Sequences: 5004
Number of extensions: 44861
Number of successful extensions: 155
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)