Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0979
(614 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0227 - 1481511-1481831,1482083-1482469,1483470-1483688 51 6e-07
07_03_1564 + 27749899-27750166,27750431-27750507,27750923-277509... 46 2e-05
05_03_0093 + 8340210-8340548,8344290-8344676,8344759-8345118 46 2e-05
01_01_0947 - 7450144-7450503,7450637-7451023,7451955-7452251 46 2e-05
01_01_0147 - 1332752-1333447,1333557-1333739 42 5e-04
01_01_0158 + 1374169-1374324,1374464-1375295,1375977-1376242 41 7e-04
05_01_0379 + 2975701-2976831 38 0.005
05_01_0380 + 2978256-2979284 38 0.006
05_01_0382 + 2985526-2986659 38 0.008
06_02_0097 + 11710560-11710859,11712605-11713270 36 0.026
02_02_0521 - 11156594-11156956,11157097-11157483,11158327-111583... 33 0.14
05_01_0381 + 2981762-2982075,2982302-2982658,2982752-2982800 33 0.18
01_01_0136 + 1237623-1237820,1238313-1239001,1239978-1240308,124... 32 0.31
11_01_0219 - 1710206-1710246,1710479-1710620,1710699-1710752,171... 31 0.96
03_05_1059 - 30020877-30021539,30022367-30022375 31 0.96
09_04_0107 - 14640097-14640348,14640472-14640701,14640805-146412... 30 1.3
01_06_0794 + 32050413-32050523,32050663-32051391 30 1.3
10_08_0184 - 15570471-15570684,15571085-15571354,15571489-155717... 30 1.7
06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764 30 1.7
05_03_0289 - 11688733-11691342 30 1.7
07_03_0973 + 23053441-23054295 29 3.9
11_06_0543 + 24792110-24792229,24792316-24792521,24793770-247944... 28 5.1
07_03_0265 + 15976331-15976645,15977575-15977784,15977869-159779... 28 5.1
06_03_0485 + 21330547-21330684,21331391-21331471,21331610-213316... 28 5.1
01_05_0218 - 19430404-19431189 28 5.1
07_01_1074 - 9599465-9599545,9599632-9599690,9600070-9600143,960... 28 6.8
09_04_0088 + 14494711-14494931,14496309-14496399,14496496-144965... 27 8.9
07_03_0957 + 22877348-22877446,22877903-22877971,22878619-22879392 27 8.9
05_05_0352 + 24328117-24328303,24328451-24328559,24330634-243306... 27 8.9
04_04_1161 + 31374240-31374403,31374495-31374812,31375347-313754... 27 8.9
>02_01_0227 - 1481511-1481831,1482083-1482469,1483470-1483688
Length = 308
Score = 51.2 bits (117), Expect = 6e-07
Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Frame = +2
Query: 74 SEIVENKVDELPDLDNLLQCPVCYEIPTGHIFQCNEGHNVCGRCKVRL-SVCPVCR 238
+ +V ++ L L++LL+CPVC I QC GH +C CK R+ + CP CR
Sbjct: 41 TSLVTVELSSLTGLNDLLECPVCTNSMRPPILQCPNGHTICSNCKHRVENHCPTCR 96
>07_03_1564 +
27749899-27750166,27750431-27750507,27750923-27750950,
27751117-27751261,27751351-27751429,27751515-27751633,
27751732-27752073,27754807-27754896,27755730-27755955,
27756398-27756784,27757176-27757496
Length = 693
Score = 46.0 bits (104), Expect = 2e-05
Identities = 19/40 (47%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +2
Query: 122 LLQCPVCYEIPTGHIFQCNEGHNVCGRCKVRL-SVCPVCR 238
LL+CPVC I QC+ GH +C CK R+ + CP CR
Sbjct: 442 LLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCR 481
>05_03_0093 + 8340210-8340548,8344290-8344676,8344759-8345118
Length = 361
Score = 46.0 bits (104), Expect = 2e-05
Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +2
Query: 122 LLQCPVCYEIPTGHIFQCNEGHNVCGRCKVRL-SVCPVCR 238
LL+CPVC I QC GH +C CK R+ + CP CR
Sbjct: 97 LLECPVCTNSMFPPIHQCQNGHTLCSTCKARVHNRCPTCR 136
>01_01_0947 - 7450144-7450503,7450637-7451023,7451955-7452251
Length = 347
Score = 46.0 bits (104), Expect = 2e-05
Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +2
Query: 122 LLQCPVCYEIPTGHIFQCNEGHNVCGRCKVRL-SVCPVCR 238
LL+CPVC I QC GH +C CK R+ + CP CR
Sbjct: 83 LLECPVCTNSMYPPIHQCQNGHTLCSTCKARVHNRCPTCR 122
>01_01_0147 - 1332752-1333447,1333557-1333739
Length = 292
Score = 41.5 bits (93), Expect = 5e-04
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +2
Query: 125 LQCPVCYEIPTGHIFQCNEGHNVCGRCKVRL-SVCPVC 235
L+CP+C+ ++ C GH CG C ++ ++CP C
Sbjct: 46 LECPICFVPFEDRVYMCKNGHAACGSCYAKMNTMCPCC 83
>01_01_0158 + 1374169-1374324,1374464-1375295,1375977-1376242
Length = 417
Score = 41.1 bits (92), Expect = 7e-04
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +2
Query: 122 LLQCPVCYEIPTGHIFQCNEGHNVCGRCKVRLSVCPVCRA-LFFGT 256
+L CPVC++I +FQC+ GH VC C+ L C + FGT
Sbjct: 36 VLHCPVCFQILRPPVFQCDLGHLVCSPCRDNLPAGGKCPSPSCFGT 81
>05_01_0379 + 2975701-2976831
Length = 376
Score = 38.3 bits (85), Expect = 0.005
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Frame = +2
Query: 125 LQCPVCYEIPTGHIFQCNEGHNVCGRCKVRLSV---CPVCRALFFG 253
L+C VC+ + IFQC GH VC C+ L+ C VCR G
Sbjct: 123 LECGVCFLLLRPPIFQCEVGHVVCAPCRDTLAPAGRCYVCRVAVAG 168
>05_01_0380 + 2978256-2979284
Length = 342
Score = 37.9 bits (84), Expect = 0.006
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Frame = +2
Query: 125 LQCPVCYEIPTGHIFQCNEGHNVCGRCKVRLSV---CPVCRALFFG 253
L+C VC+ IFQC GH VC C+ +L+ C VCR G
Sbjct: 73 LECGVCFLPLRPPIFQCEVGHVVCSPCRDKLAPAGRCHVCRVAVAG 118
>05_01_0382 + 2985526-2986659
Length = 377
Score = 37.5 bits (83), Expect = 0.008
Identities = 20/46 (43%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Frame = +2
Query: 125 LQCPVCYEIPTGHIFQCNEGHNVCGRCKVRLSV---CPVCRALFFG 253
L+C VC IFQC GH VC C+ +L+ C VCRA G
Sbjct: 124 LECGVCCLPLRPPIFQCEVGHVVCAPCRDKLAPAGRCHVCRAAVAG 169
>06_02_0097 + 11710560-11710859,11712605-11713270
Length = 321
Score = 35.9 bits (79), Expect = 0.026
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +2
Query: 119 NLLQCPVCYEIPTGHIFQCNEGHNVCGRCKVRLS-VCPVC 235
++L C +C+E ++QC GH C C +LS C +C
Sbjct: 83 DVLDCSICFESLRPPLYQCQNGHVACFSCWSKLSNKCHIC 122
>02_02_0521 -
11156594-11156956,11157097-11157483,11158327-11158383,
11159671-11159970
Length = 368
Score = 33.5 bits (73), Expect = 0.14
Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = +2
Query: 164 IFQCNEGHNVCGRCKVRL-SVCPVCR 238
+ +C GH +C CK R+ + CP CR
Sbjct: 117 LLECQNGHTLCSTCKTRVHNRCPTCR 142
>05_01_0381 + 2981762-2982075,2982302-2982658,2982752-2982800
Length = 239
Score = 33.1 bits (72), Expect = 0.18
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 125 LQCPVCYEIPTGHIFQCNEGHNVCGRCKVRLS 220
L+C VC +FQC +GH VC C+ +L+
Sbjct: 66 LECGVCRLPLRPPVFQCEDGHVVCSPCRDKLA 97
>01_01_0136 +
1237623-1237820,1238313-1239001,1239978-1240308,
1240614-1241351
Length = 651
Score = 32.3 bits (70), Expect = 0.31
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = +2
Query: 122 LLQCPVCYEIPTGHIFQC-NEGHNVCGRCKVRL-SVCPVCRA 241
+L+C VC+ T ++QC GH C C + C CRA
Sbjct: 50 VLECDVCFGPLTPPLYQCMRRGHITCSTCVAEMGQECQWCRA 91
Score = 30.7 bits (66), Expect = 0.96
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +2
Query: 122 LLQCPVCYEIPTGHIFQCNEGHNVCGRCK 208
LL C C + +F+C+E H VC C+
Sbjct: 390 LLHCHACLQPLKPPVFKCDEAHIVCSGCR 418
>11_01_0219 -
1710206-1710246,1710479-1710620,1710699-1710752,
1710838-1710909,1711631-1711699,1711807-1711848,
1711946-1712014,1712130-1712267,1712390-1712500,
1712576-1712726,1713720-1713775,1714076-1714753
Length = 540
Score = 30.7 bits (66), Expect = 0.96
Identities = 18/70 (25%), Positives = 34/70 (48%)
Frame = +1
Query: 223 LPGMQGTIFWNRNYAMEELIANVRKLRAFKLGGKVTRGLLASDSSSTPARDSGSDNAEYL 402
L G G + + +++L + K + GG +G + + DS S++ EYL
Sbjct: 155 LEGEAGNEVEDEFFKIKDLDKFMVKGEEAEYGGGAKQGKKKKKTENWMEEDSDSEDEEYL 214
Query: 403 GEDENNDNQN 432
EDE +D+++
Sbjct: 215 DEDEEDDDEH 224
>03_05_1059 - 30020877-30021539,30022367-30022375
Length = 223
Score = 30.7 bits (66), Expect = 0.96
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +2
Query: 182 GH-NVCGRCKVRLSVCPVCRALFFGTG 259
GH ++C C R VCP+CR+ TG
Sbjct: 47 GHASLCAECSQRCDVCPICRSPIPDTG 73
>09_04_0107 -
14640097-14640348,14640472-14640701,14640805-14641215,
14641481-14643831,14643927-14644093
Length = 1136
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +1
Query: 316 GGKVTRGLLASDSSSTPARDSGSDNAEYLGEDE 414
GGK T + AS SSS+P D+ S++ L E
Sbjct: 488 GGKKTTAMAASSSSSSPVHDAESEDENSLDHSE 520
>01_06_0794 + 32050413-32050523,32050663-32051391
Length = 279
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Frame = +2
Query: 110 DLDNLLQCPVCYEIPTGHIFQCNEGHNVCGRCKVRL---SVCPVC 235
DL+ +L C VC + QC GH +C C +L + C VC
Sbjct: 18 DLE-VLDCTVCCHPLKPPVLQCGVGHVICSSCHGKLPDKNRCHVC 61
>10_08_0184 -
15570471-15570684,15571085-15571354,15571489-15571711,
15571809-15571875,15571996-15572137,15572226-15572290
Length = 326
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +2
Query: 83 VENKVDELPDLDNLLQCPVCYEIPTGHIFQCNEGHNVCGRC 205
VE +V E+ DL+ L+C +C E+ I + H++C RC
Sbjct: 124 VEERVSEV-DLERELECGICLEV-NAKIVLPDCAHSLCMRC 162
>06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764
Length = 640
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +1
Query: 343 ASDSSSTPARDSGSDNAEYLGEDENNDNQNSVVALTHVK 459
+S SSS+ A D G DN E +D +ND S ++ +K
Sbjct: 469 SSSSSSSLAMDRGEDNHELPRQDHHNDMATSSESVNQLK 507
>05_03_0289 - 11688733-11691342
Length = 869
Score = 29.9 bits (64), Expect = 1.7
Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Frame = +1
Query: 226 PGMQGTIFWNRNYAMEELIANVRKLRAFKLGGKVTRGLLASDSSSTPARDSGSDNA---E 396
P M G + WN +A++ F+ GGK SDS++T DS + NA
Sbjct: 792 PSM-GDVLWNLEFALQ-------MQETFENGGKTEGADSTSDSTTTSVADSMAANAAALS 843
Query: 397 YLGED-ENNDNQNSVV 441
+ ED + D NSVV
Sbjct: 844 LISEDMDEEDIANSVV 859
>07_03_0973 + 23053441-23054295
Length = 284
Score = 28.7 bits (61), Expect = 3.9
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +3
Query: 426 SKFSSGPNPCKGFFVAL 476
+KF++GP P +GF+VAL
Sbjct: 102 AKFAAGPEPVEGFYVAL 118
>11_06_0543 +
24792110-24792229,24792316-24792521,24793770-24794462,
24794538-24794717,24794793-24795084,24795166-24795375
Length = 566
Score = 28.3 bits (60), Expect = 5.1
Identities = 11/40 (27%), Positives = 20/40 (50%)
Frame = +2
Query: 86 ENKVDELPDLDNLLQCPVCYEIPTGHIFQCNEGHNVCGRC 205
E + + D+DN+ P+ + GH +E +V G+C
Sbjct: 238 EAGLKSMDDVDNIEMAPLAAQFKLGHSLTTDEYRHVVGKC 277
>07_03_0265 +
15976331-15976645,15977575-15977784,15977869-15977916,
15978307-15978675,15978736-15978747,15978763-15978870,
15979156-15979493,15980313-15980430,15983247-15984107,
15984457-15984750
Length = 890
Score = 28.3 bits (60), Expect = 5.1
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = +1
Query: 268 MEELIANVRKLRAFKLGGKVTRGLLASDSSSTPAR 372
+EE+ NV RAF LG KV + LLA S A+
Sbjct: 852 LEEVKINVDCTRAFSLGSKVLKKLLALPRVSDKAK 886
>06_03_0485 +
21330547-21330684,21331391-21331471,21331610-21331683,
21331767-21331842,21332014-21332081,21332803-21332926,
21333264-21333362,21333679-21333815,21334166-21334247,
21334595-21334657,21335272-21335319,21335452-21335514,
21335840-21335923,21336098-21336118
Length = 385
Score = 28.3 bits (60), Expect = 5.1
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Frame = -1
Query: 197 HIHYDLHCIGKYDL*GF-HNI-LDTE-VSYPSLAIRQPYFQLSPTLC 66
H +YD+ + K G H+I +D E + +P+ R YF L+PTLC
Sbjct: 173 HTNYDIRMLSKSIEKGVTHDISIDPENIKWPTFK-RLSYFMLAPTLC 218
>01_05_0218 - 19430404-19431189
Length = 261
Score = 28.3 bits (60), Expect = 5.1
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = +2
Query: 149 IPTGHIFQCNEGHNVC-GRCKVRLSVCPVCRALFFGTGTMPWKSSL 283
+P GH F H C R + + CP+CR G PW+S +
Sbjct: 194 LPCGHAF-----HPPCITRWLFKGTTCPICRDDLTGLAAAPWESGV 234
>07_01_1074 -
9599465-9599545,9599632-9599690,9600070-9600143,
9600797-9600996,9601074-9601365,9601665-9602411,
9602653-9602696,9602714-9602827,9603590-9603838,
9603922-9603927
Length = 621
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +2
Query: 71 MSEIVEN-KVDELPDLDNLLQCPVCYEIPTGHIFQCNEGHNVCGRC 205
M + +E +++ L D+ N+ P+ + GH +E N+ G C
Sbjct: 279 MQDFLEGARLNSLFDVRNIANAPLAAQYKLGHSLTTDEYRNIVGNC 324
>09_04_0088 +
14494711-14494931,14496309-14496399,14496496-14496571,
14496671-14496755,14497381-14497450,14499111-14499316,
14499434-14499508,14501043-14501133,14501400-14501441,
14501661-14501741,14502010-14502089,14502254-14502365
Length = 409
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/56 (23%), Positives = 29/56 (51%)
Frame = +2
Query: 71 MSEIVENKVDELPDLDNLLQCPVCYEIPTGHIFQCNEGHNVCGRCKVRLSVCPVCR 238
M+++ + + D+L + + +L C +C+E + + +C C + CP+CR
Sbjct: 333 MAKLSQQQCDKLKN-EQIL-CRICFERDICIVLLPCRHYVLCEACSDKCRSCPICR 386
>07_03_0957 + 22877348-22877446,22877903-22877971,22878619-22879392
Length = 313
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Frame = +2
Query: 113 LDNLLQCPVCYEIPTGHIFQCNEGH---NVCGRCKVRLSVCPVCRALF 247
++ +QCP + I C + H + R +V + VCP C F
Sbjct: 246 VEQCVQCPARFSTVGALIEHCEKSHQSNSQSSRSRVTVDVCPKCSKAF 293
>05_05_0352 +
24328117-24328303,24328451-24328559,24330634-24330692,
24331139-24331220,24331361-24331481,24331751-24332278,
24332724-24332831,24332934-24333131,24334043-24334234,
24336116-24336199,24336385-24336525,24336683-24336748,
24336880-24337047,24337134-24337463,24337568-24337666
Length = 823
Score = 27.5 bits (58), Expect = 8.9
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 7/53 (13%)
Frame = +2
Query: 101 ELPDLDNLLQCPVCYEI--PTGHIFQCNEGHNVCGRC---KVRL--SVCPVCR 238
+L D+ +QCP+C I T + +C H C C +RL + CP CR
Sbjct: 104 KLMDIRKEVQCPICLGIIRKTRTVMECL--HRFCRDCIDKSMRLGNNECPACR 154
>04_04_1161 +
31374240-31374403,31374495-31374812,31375347-31375493,
31375674-31375754,31375799-31375886,31375999-31376176,
31376705-31376794,31376795-31376866,31377247-31377257
Length = 382
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/40 (27%), Positives = 25/40 (62%)
Frame = +2
Query: 17 IHSG*IDFFINQPTLFYIMSEIVENKVDELPDLDNLLQCP 136
+H I F+N + Y +EI+++ + ++P+ ++LL+ P
Sbjct: 155 LHCHPIRAFLNWHLVRYKAAEIIKDLIPQIPEFNDLLKLP 194
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,434,858
Number of Sequences: 37544
Number of extensions: 270061
Number of successful extensions: 786
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 785
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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