Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0979
(614 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_43575| Best HMM Match : Sina (HMM E-Value=0) 56 3e-08
SB_12329| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.080
SB_36856| Best HMM Match : zf-C3HC4 (HMM E-Value=4.4e-05) 30 1.3
SB_31664| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_25082| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_16819| Best HMM Match : BIR (HMM E-Value=7.5e-30) 30 1.3
SB_5147| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_10859| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_39051| Best HMM Match : Gal_Lectin (HMM E-Value=2.5e-21) 29 3.0
SB_28806| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_28123| Best HMM Match : zf-NF-X1 (HMM E-Value=0.24) 29 3.0
SB_56875| Best HMM Match : LON (HMM E-Value=0) 28 5.2
SB_42290| Best HMM Match : Band_41 (HMM E-Value=3.6e-09) 28 5.2
SB_30862| Best HMM Match : MAM (HMM E-Value=0.00035) 28 5.2
SB_47041| Best HMM Match : DUF1168 (HMM E-Value=0.41) 28 6.9
SB_7863| Best HMM Match : Pentaxin (HMM E-Value=1.8) 28 6.9
SB_6822| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_58994| Best HMM Match : EGF_CA (HMM E-Value=2.3e-29) 27 9.1
SB_28695| Best HMM Match : Ras (HMM E-Value=0) 27 9.1
>SB_43575| Best HMM Match : Sina (HMM E-Value=0)
Length = 432
Score = 55.6 bits (128), Expect = 3e-08
Identities = 19/43 (44%), Positives = 28/43 (65%)
Frame = +2
Query: 110 DLDNLLQCPVCYEIPTGHIFQCNEGHNVCGRCKVRLSVCPVCR 238
DL ++ +CPVC++ I QC+ GH VC C+ +L+ CP CR
Sbjct: 30 DLTSIFECPVCFDYVLPPILQCSSGHLVCSNCRPKLTCCPTCR 72
>SB_12329| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 197
Score = 34.3 bits (75), Expect = 0.080
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = +2
Query: 98 DELPDLDNLLQCPVCYEIPTGHIF-QCNEGHNVC-GRCKVRLSVCPVCR 238
++L L++ L+C VC + + C GH VC +C + L CPVCR
Sbjct: 135 EKLSKLEDGLRCKVCMDEQINAVLIPC--GHMVCCEQCAMNLEACPVCR 181
>SB_36856| Best HMM Match : zf-C3HC4 (HMM E-Value=4.4e-05)
Length = 406
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 8/45 (17%)
Frame = +2
Query: 131 CPVCYEIPTGHIFQCNEGHNVCGRC--------KVRLSVCPVCRA 241
CPVC E+ + HNVC C +R CP+CRA
Sbjct: 22 CPVCIEVFVEPKSLPSCAHNVCRECLEKITKRNSIRFVECPICRA 66
>SB_31664| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 223
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 8/62 (12%)
Frame = +2
Query: 77 EIVENKVDELP-----DLDNLLQCPVCYEI---PTGHIFQCNEGHNVCGRCKVRLSVCPV 232
+ VE V+E P L+ + C +C E T +C G+++ ++R + CPV
Sbjct: 4 QTVERMVEEQPPPPSGSLEEPILCSICLEEVQKETSAELECGHGNHLKCVLRLRSATCPV 63
Query: 233 CR 238
CR
Sbjct: 64 CR 65
>SB_25082| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 585
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Frame = +2
Query: 104 LPDLDNL--LQCPVCYEIPTGHIFQCNEGHNV-CGRCKVRLSVCPVCR 238
+PD+D QC +C E ++ N GH C C ++ CPVCR
Sbjct: 527 IPDMDENQGTQCVICLENQR-NVVLLNCGHVCSCRTCAQQIHQCPVCR 573
>SB_16819| Best HMM Match : BIR (HMM E-Value=7.5e-30)
Length = 514
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = +2
Query: 131 CPVCYEIPTGHIF-QCNEGH-NVCGRCKVRLSVCPVCRA 241
C +C + G +F C GH + C C + +CP+CRA
Sbjct: 473 CKICMDAEVGIVFLPC--GHLSCCPGCAEGMELCPMCRA 509
>SB_5147| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 347
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Frame = +2
Query: 158 GHIFQCNEGHNVC-GRC--KVRLSVCPVCRALFFGTG 259
GH ++C GH C G C + S CP C + GTG
Sbjct: 273 GHWYKCPNGHFYCIGECGGATQESNCPECGSRIGGTG 309
>SB_10859| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 387
Score = 29.5 bits (63), Expect = 2.3
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 8/53 (15%)
Frame = +2
Query: 110 DLDNLLQCPVCYEIPTGHIFQCNEGHNVCGRC------KVRLS--VCPVCRAL 244
++ + + CP+CYE HN+C C K +L CP+CRA+
Sbjct: 18 NIQDEISCPICYEDFEEPKCLPKCAHNICRECLLGIIEKAQLERFECPICRAI 70
>SB_39051| Best HMM Match : Gal_Lectin (HMM E-Value=2.5e-21)
Length = 1405
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Frame = +2
Query: 206 KVRLSVCPVCRALF--FGTGTMPWKS 277
+ R + CP CRALF F GT W S
Sbjct: 252 RARQAACPDCRALFHVFSEGTRGWNS 277
>SB_28806| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 614
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/45 (33%), Positives = 19/45 (42%)
Frame = +2
Query: 104 LPDLDNLLQCPVCYEIPTGHIFQCNEGHNVCGRCKVRLSVCPVCR 238
LP + + QCP CY P + +G C RC V P R
Sbjct: 276 LPSVQGVTQCPRCY--PVSKVLPSVQGVTRCPRCYPVSKVLPNVR 318
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/47 (31%), Positives = 20/47 (42%)
Frame = +2
Query: 104 LPDLDNLLQCPVCYEIPTGHIFQCNEGHNVCGRCKVRLSVCPVCRAL 244
LP + + QCP CY P + +G C RC V P + L
Sbjct: 371 LPSVQGVTQCPRCY--PVSKVLPGVQGVTQCPRCYPVSKVLPSVQGL 415
Score = 28.7 bits (61), Expect = 4.0
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = +2
Query: 104 LPDLDNLLQCPVCYEIPTGHIFQCNEGHNVCGRCKVRLSVCP 229
LP + + QCP CY P + +G C RC V P
Sbjct: 352 LPGVQGVTQCPRCY--PMSEVLPSVQGVTQCPRCYPVSKVLP 391
Score = 28.3 bits (60), Expect = 5.2
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Frame = +2
Query: 83 VENKVDE-LPDLDNLLQCPVCYEIPTGHIFQCNEGHNVCGRCKVRLSVCP 229
V N V + LP + + +CP CY P + +G C RC V P
Sbjct: 192 VHNPVSKVLPSVQGVTRCPRCY--PMSKVLPNVQGVTQCSRCYPVSKVLP 239
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = +2
Query: 104 LPDLDNLLQCPVCYEIPTGHIFQCNEGHNVCGRCKVRLSVCP 229
LP++ QCP CY P + +G C RC V P
Sbjct: 314 LPNVRGFTQCPRCY--PVSKVLPSVQGVTRCPRCYPVSKVLP 353
>SB_28123| Best HMM Match : zf-NF-X1 (HMM E-Value=0.24)
Length = 453
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Frame = +2
Query: 158 GHIFQCNEGHNVC-GRC--KVRLSVCPVCRALFFGT 256
GH ++C GH C G C ++ S CP C A G+
Sbjct: 381 GHWYKCPNGHFYCIGECGGAMQESTCPECGAAIGGS 416
>SB_56875| Best HMM Match : LON (HMM E-Value=0)
Length = 925
Score = 28.3 bits (60), Expect = 5.2
Identities = 15/64 (23%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = +1
Query: 253 NRNYAMEELIANVRKLRAFKL-GGKVTRGLLASDSSSTPARDSGSDNAEYLGEDENNDNQ 429
++N A+ L+AN + + ++ RG S + + SG+D+ + G+ +ND
Sbjct: 47 HKNAALYALVANSQSATSIRVVTAFFPRGFATCQSDNPESSSSGNDDHDDDGKGRDNDEP 106
Query: 430 NSVV 441
++V+
Sbjct: 107 DAVI 110
>SB_42290| Best HMM Match : Band_41 (HMM E-Value=3.6e-09)
Length = 474
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Frame = +2
Query: 119 NLLQCPVCYEIPTGHIFQCNEGHNVCGR-CKVRLSVCPVCR 238
N L C +C + F C GH C + C L CP+C+
Sbjct: 402 NDLTCQICMDAEVNTAF-CPCGHVYCCQTCASNLYYCPLCK 441
>SB_30862| Best HMM Match : MAM (HMM E-Value=0.00035)
Length = 330
Score = 28.3 bits (60), Expect = 5.2
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +1
Query: 373 DSGSDNAEYLGEDENNDNQNSVVALTH 453
DS DN+ +G D+N+DNQ ++ ++H
Sbjct: 79 DSDDDNSVSVGNDDNDDNQ--IIRISH 103
>SB_47041| Best HMM Match : DUF1168 (HMM E-Value=0.41)
Length = 225
Score = 27.9 bits (59), Expect = 6.9
Identities = 16/56 (28%), Positives = 28/56 (50%)
Frame = +1
Query: 292 RKLRAFKLGGKVTRGLLASDSSSTPARDSGSDNAEYLGEDENNDNQNSVVALTHVK 459
+K R + K+ L A + +TPA DS +DN + + + D +V + +VK
Sbjct: 140 QKRRRRREKAKLYASLRALSNDTTPANDSKADNTQASVTEIDEDVTTTVASFKNVK 195
>SB_7863| Best HMM Match : Pentaxin (HMM E-Value=1.8)
Length = 604
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +1
Query: 319 GKVTRGLLASDSSSTPARDSGSDNAEYLGEDENNDNQNSVVALTH 453
G G SD+ +T + DN L E +N+DN N++ + H
Sbjct: 395 GNTLSGKDHSDNGNTLSGKDHVDNGNSLSEIDNSDNGNTLSEIDH 439
>SB_6822| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 975
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +1
Query: 346 SDSSSTPARDSGSDNAEYLGEDENNDN 426
SDS++TP RD SD+ L D+ +D+
Sbjct: 711 SDSNATPRRDKRSDSNATLRRDKKSDS 737
>SB_58994| Best HMM Match : EGF_CA (HMM E-Value=2.3e-29)
Length = 309
Score = 27.5 bits (58), Expect = 9.1
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = +1
Query: 346 SDSSSTPARDSGSDNAEYLGEDENNDNQN--SVVALTHVKAFSLL 474
+DS S D+ +D+ D +NDN N ++V++ +K SL+
Sbjct: 47 NDSDSDNENDNVNDSDNETDNDNDNDNNNNDNIVSIIIIKIMSLV 91
>SB_28695| Best HMM Match : Ras (HMM E-Value=0)
Length = 1058
Score = 27.5 bits (58), Expect = 9.1
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +1
Query: 343 ASDSSSTPARDSGSDNAEYLGEDENN 420
A + A D G DN++Y G D+N+
Sbjct: 812 ADNGRDNDAHDGGGDNSDYDGSDDND 837
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,867,517
Number of Sequences: 59808
Number of extensions: 325410
Number of successful extensions: 1387
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1332
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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