Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0979
(614 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U89792-1|AAB94380.1| 339|Caenorhabditis elegans seven-in-absent... 50 1e-06
AC024759-5|AAK68432.1| 419|Caenorhabditis elegans Hypothetical ... 50 1e-06
Z70681-2|CAA94578.2| 203|Caenorhabditis elegans Hypothetical pr... 35 0.053
Z70205-2|CAA94116.1| 529|Caenorhabditis elegans Hypothetical pr... 33 0.12
AL023834-1|CAA19481.1| 177|Caenorhabditis elegans Hypothetical ... 31 0.65
U53337-2|AAA96184.1| 639|Caenorhabditis elegans Hypothetical pr... 31 0.86
U21317-6|AAA62527.1| 313|Caenorhabditis elegans Hypothetical pr... 29 2.0
U39653-1|AAM69065.2| 2471|Caenorhabditis elegans Hypothetical pr... 29 3.5
AF164625-1|AAD47816.1| 944|Caenorhabditis elegans tandem-array-... 29 3.5
AF022974-6|AAC48041.1| 944|Caenorhabditis elegans Tandem array ... 29 3.5
Z22177-12|CAA80152.1| 974|Caenorhabditis elegans Hypothetical p... 28 4.6
Z19155-5|CAA79562.1| 974|Caenorhabditis elegans Hypothetical pr... 28 4.6
U21308-5|AAB93318.1| 258|Caenorhabditis elegans Warthog (hedgeh... 28 4.6
AF067217-1|AAY55828.1| 191|Caenorhabditis elegans Hypothetical ... 28 6.1
>U89792-1|AAB94380.1| 339|Caenorhabditis elegans seven-in-absentia
protein homologue-1 protein.
Length = 339
Score = 50.0 bits (114), Expect = 1e-06
Identities = 18/47 (38%), Positives = 26/47 (55%)
Frame = +2
Query: 98 DELPDLDNLLQCPVCYEIPTGHIFQCNEGHNVCGRCKVRLSVCPVCR 238
D ++ ++ +CPVC E QC+ GH VC C+ +L CP CR
Sbjct: 79 DSSAEILSVFECPVCLEYMLPPYMQCSSGHLVCSNCRPKLQCCPTCR 125
>AC024759-5|AAK68432.1| 419|Caenorhabditis elegans Hypothetical
protein Y37E11AR.2 protein.
Length = 419
Score = 50.0 bits (114), Expect = 1e-06
Identities = 18/47 (38%), Positives = 26/47 (55%)
Frame = +2
Query: 98 DELPDLDNLLQCPVCYEIPTGHIFQCNEGHNVCGRCKVRLSVCPVCR 238
D ++ ++ +CPVC E QC+ GH VC C+ +L CP CR
Sbjct: 145 DSSAEILSVFECPVCLEYMLPPYMQCSSGHLVCSNCRPKLQCCPTCR 191
>Z70681-2|CAA94578.2| 203|Caenorhabditis elegans Hypothetical
protein C30F2.2 protein.
Length = 203
Score = 34.7 bits (76), Expect = 0.053
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
Frame = +2
Query: 104 LPDLDNLLQCPVCYEIPTGHIFQ-CNE--GHNVCGRCKVRLSVCPVCRA--LFFGT 256
LP++D +CP C E + + C GH++C +C+ ++ CP+C+ FFGT
Sbjct: 2 LPNVD-FSRCPTCLEDYDDNSHRPCVGFCGHSICLKCQSKIVSCPLCKRKNAFFGT 56
>Z70205-2|CAA94116.1| 529|Caenorhabditis elegans Hypothetical
protein C11H1.3 protein.
Length = 529
Score = 33.5 bits (73), Expect = 0.12
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 7/68 (10%)
Frame = +2
Query: 65 YIMSEI--VENKVDELPDLDNLLQCPVCY-EIPTGHIFQCNEGHNVCGRC----KVRLSV 223
Y++ EI +ENK E D D+ L+C +C +I I C VC C + + +
Sbjct: 245 YLLQEIFGIENKSVETMDDDSGLECIICLSDIRDTVILPCRH-LCVCSNCADSLRYKHNN 303
Query: 224 CPVCRALF 247
CP+CR+ F
Sbjct: 304 CPICRSPF 311
>AL023834-1|CAA19481.1| 177|Caenorhabditis elegans Hypothetical
protein Y32B12A.1 protein.
Length = 177
Score = 31.1 bits (67), Expect = 0.65
Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = +2
Query: 122 LLQCPVCYEIPTGHIFQCN--EGHNVCGRCKVR 214
+++C CY TGH F+C +++C C+ R
Sbjct: 132 IVRCDSCYTTITGHRFKCTICTDYDICSSCEAR 164
>U53337-2|AAA96184.1| 639|Caenorhabditis elegans Hypothetical
protein R02E12.4 protein.
Length = 639
Score = 30.7 bits (66), Expect = 0.86
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Frame = +2
Query: 125 LQCPVCYEIPTGHIFQCNEGHNVCGRCKVR----LSVCPVCR 238
+QC +C+++ + H++C C R SVCP+CR
Sbjct: 24 VQCHICFQVNHEPVTFLTCKHSICAGCAGRWLSSCSVCPMCR 65
>U21317-6|AAA62527.1| 313|Caenorhabditis elegans Hypothetical
protein B0495.8a protein.
Length = 313
Score = 29.5 bits (63), Expect = 2.0
Identities = 22/55 (40%), Positives = 27/55 (49%)
Frame = +1
Query: 268 MEELIANVRKLRAFKLGGKVTRGLLASDSSSTPARDSGSDNAEYLGEDENNDNQN 432
M+E I RK R KLG + RG +S RD G D EY G D + D +N
Sbjct: 229 MKETIDERRKEREEKLGSQ--RGYQRRESYGR--RDRGGDRGEYRG-DRDRDRRN 278
>U39653-1|AAM69065.2| 2471|Caenorhabditis elegans Hypothetical
protein T13H2.5a protein.
Length = 2471
Score = 28.7 bits (61), Expect = 3.5
Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 5/41 (12%)
Frame = +2
Query: 131 CPVCYEIPTGHIFQCNEGHNVCGRCKVRL-----SVCPVCR 238
C VC E+ G I GH C +C + + CP CR
Sbjct: 162 CDVCQELIQGSIMTKKCGHRFCDQCILVAFMRSGNTCPTCR 202
>AF164625-1|AAD47816.1| 944|Caenorhabditis elegans
tandem-array-modifier protein protein.
Length = 944
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 119 NLLQCPVCYEIPTGHIFQCNEGHNVCGRCKVRL 217
++++CP+CY I Q GH +C C RL
Sbjct: 17 HVVECPICYNI-YDKPMQMGCGHTLCSTCIGRL 48
>AF022974-6|AAC48041.1| 944|Caenorhabditis elegans Tandem array
expression modifierprotein 1 protein.
Length = 944
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 119 NLLQCPVCYEIPTGHIFQCNEGHNVCGRCKVRL 217
++++CP+CY I Q GH +C C RL
Sbjct: 17 HVVECPICYNI-YDKPMQMGCGHTLCSTCIGRL 48
>Z22177-12|CAA80152.1| 974|Caenorhabditis elegans Hypothetical
protein F54G8.4 protein.
Length = 974
Score = 28.3 bits (60), Expect = 4.6
Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 7/56 (12%)
Frame = +2
Query: 95 VDELPDLDNLLQCPVCYE-------IPTGHIFQCNEGHNVCGRCKVRLSVCPVCRA 241
V+ L ++ LL CP+C + +P H F C C R CP CRA
Sbjct: 31 VNPLEKIEQLLTCPICLDRYKQPKLLPCQHTF-CYPCLESCADTLHRNLKCPECRA 85
>Z19155-5|CAA79562.1| 974|Caenorhabditis elegans Hypothetical
protein F54G8.4 protein.
Length = 974
Score = 28.3 bits (60), Expect = 4.6
Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 7/56 (12%)
Frame = +2
Query: 95 VDELPDLDNLLQCPVCYE-------IPTGHIFQCNEGHNVCGRCKVRLSVCPVCRA 241
V+ L ++ LL CP+C + +P H F C C R CP CRA
Sbjct: 31 VNPLEKIEQLLTCPICLDRYKQPKLLPCQHTF-CYPCLESCADTLHRNLKCPECRA 85
>U21308-5|AAB93318.1| 258|Caenorhabditis elegans Warthog
(hedgehog-like family)protein 10 protein.
Length = 258
Score = 28.3 bits (60), Expect = 4.6
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +1
Query: 355 SSTPARDSGSDNAEYLGEDENNDNQNSVV 441
++TP + ++ AE L ED+ NDN+ +V
Sbjct: 182 TTTPTVEEEAEEAEQLEEDQPNDNEAEIV 210
>AF067217-1|AAY55828.1| 191|Caenorhabditis elegans Hypothetical
protein F56A6.5 protein.
Length = 191
Score = 27.9 bits (59), Expect = 6.1
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Frame = +2
Query: 128 QCPVCY-EIPTGHIFQC--NEGHNVCGRCKVRL--SVCPVCR 238
+C +CY E C GH +C RC+++L CP C+
Sbjct: 5 ECSICYDEYDHDTQIPCIGTCGHTICDRCRLQLLNKRCPHCK 46
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,830,935
Number of Sequences: 27780
Number of extensions: 250620
Number of successful extensions: 780
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 780
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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