Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0979
         (614 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.1  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    22   5.5  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   9.6  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   9.6  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.6  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    21   9.6  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 15/49 (30%), Positives = 21/49 (42%)
 Frame = +3

Query: 174 AMKVIMYVADVKFGFLSARYAGHYFLEQELCHGRAHCKCPETKSF*IRW 320
           A KV   V+ +    ++AR+AG Y    E   G A      T +   RW
Sbjct: 633 AKKVADRVSMLMISVITARHAGEYVCTAENAAGTASHSTTLTVNVPPRW 681


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +2

Query: 161 HIFQCNEGHNVCGR 202
           HI     GH VCGR
Sbjct: 115 HICMLELGHEVCGR 128


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/47 (17%), Positives = 21/47 (44%)
 Frame = +3

Query: 123 YFSVQYVMKSLQVIFSNAMKVIMYVADVKFGFLSARYAGHYFLEQEL 263
           YF+ + + K+  +   +   +     ++ +  L+A Y G Y  +  +
Sbjct: 168 YFNDEVMQKAYNIAMGDTADMKKTYNNIDYYLLAANYTGWYLTKHNV 214


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/47 (17%), Positives = 21/47 (44%)
 Frame = +3

Query: 123 YFSVQYVMKSLQVIFSNAMKVIMYVADVKFGFLSARYAGHYFLEQEL 263
           YF+ + + K+  +   +   +     ++ +  L+A Y G Y  +  +
Sbjct: 168 YFNDEVMQKAYNIAMGDTADMKKTYNNIDYYLLAANYTGWYLTKHNV 214


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 256 RNYAMEELIANVRKLRAFKLG 318
           R Y  EEL A +R +++ KLG
Sbjct: 589 RAYTEEELQAALRDIQSGKLG 609


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/9 (88%), Positives = 9/9 (100%)
 Frame = +2

Query: 356 VVHQQETVD 382
           VVH+QETVD
Sbjct: 179 VVHRQETVD 187


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,043
Number of Sequences: 438
Number of extensions: 2829
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)