Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0979
(614 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g37910.1 68418.m04567 seven in absentia (SINA) family protein... 52 4e-07
At3g58040.1 68416.m06470 seven in absentia (SINA) family protein... 49 3e-06
At5g37890.1 68418.m04565 seven in absentia (SINA) protein, putat... 48 4e-06
At2g41980.1 68415.m05193 seven in absentia (SINA) family protein... 48 4e-06
At4g27880.1 68417.m04002 seven in absentia (SINA) family protein... 47 9e-06
At5g37870.1 68418.m04561 seven in absentia (SINA) family protein... 46 2e-05
At3g61790.1 68416.m06933 seven in absentia (SINA) family protein... 46 2e-05
At5g62800.1 68418.m07883 seven in absentia (SINA) family protein... 46 2e-05
At3g01650.1 68416.m00096 copine-related low similarity to SP|Q99... 45 3e-05
At1g66620.1 68414.m07570 seven in absentia (SINA) protein, putat... 45 5e-05
At1g66610.1 68414.m07569 seven in absentia (SINA) protein, putat... 43 1e-04
At1g66650.1 68414.m07573 seven in absentia (SINA) protein, putat... 42 2e-04
At1g66630.1 68414.m07571 seven in absentia (SINA) family protein... 42 2e-04
At5g14420.4 68418.m01687 copine-related low similarity to SP|Q99... 42 3e-04
At5g14420.3 68418.m01686 copine-related low similarity to SP|Q99... 42 3e-04
At5g14420.2 68418.m01685 copine-related low similarity to SP|Q99... 42 3e-04
At5g14420.1 68418.m01684 copine-related low similarity to SP|Q99... 42 3e-04
At5g63970.1 68418.m08032 copine-related low similarity to SP|Q99... 40 0.001
At1g67800.3 68414.m07738 copine-related low similarity to SP|Q99... 39 0.003
At1g67800.2 68414.m07739 copine-related low similarity to SP|Q99... 39 0.003
At1g67800.1 68414.m07737 copine-related low similarity to SP|Q99... 39 0.003
At5g37930.1 68418.m04569 seven in absentia (SINA) family protein... 38 0.004
At1g79380.1 68414.m09251 copine-related low similarity to SP|Q99... 38 0.004
At4g39050.1 68417.m05531 kinesin-related protein (MKRP2) kinesin... 36 0.021
At2g21380.1 68415.m02544 kinesin motor protein-related 35 0.037
At1g68820.1 68414.m07868 membrane protein, putative contains 7 t... 35 0.049
At3g14970.1 68416.m01893 zinc finger (C3HC4-type RING finger) fa... 32 0.35
At2g32950.1 68415.m04039 COP1 regulatory protein photomorphogene... 32 0.35
At3g15740.1 68416.m01994 zinc finger (C3HC4-type RING finger) fa... 31 0.46
At4g24560.1 68417.m03520 ubiquitin-specific protease 16, putativ... 30 1.4
At2g40770.1 68415.m05030 SNF2 domain-containing protein / helica... 30 1.4
At1g63900.1 68414.m07235 zinc finger (C3HC4-type RING finger) fa... 29 2.4
At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) fa... 29 3.2
At3g13590.1 68416.m01711 DC1 domain-containing protein contains ... 29 3.2
At5g42200.1 68418.m05136 zinc finger (C3HC4-type RING finger) fa... 28 4.3
At3g52410.1 68416.m05764 hypothetical protein contains Pfam prof... 28 4.3
At2g25200.1 68415.m03014 expressed protein 28 4.3
At1g18470.1 68414.m02304 zinc finger (C3HC4-type RING finger) fa... 28 4.3
At1g55255.1 68414.m06311 zinc finger (C3HC4-type RING finger) fa... 28 5.7
At2g39810.1 68415.m04890 expressed protein 27 7.5
At1g75850.1 68414.m08810 vacuolar protein sorting-associated pro... 27 7.5
At5g27970.1 68418.m03369 expressed protein 27 9.9
At4g33760.1 68417.m04793 tRNA synthetase class II (D, K and N) f... 27 9.9
At4g09840.1 68417.m01613 expressed protein 27 9.9
At3g47990.1 68416.m05232 zinc finger (C3HC4-type RING finger) fa... 27 9.9
At1g11905.1 68414.m01373 expressed protein 27 9.9
>At5g37910.1 68418.m04567 seven in absentia (SINA) family protein
similar to SIAH1 protein [Brassica napus var. napus]
GI:7657876; contains Pfam profile PF03145: Seven in
absentia protein family
Length = 276
Score = 51.6 bits (118), Expect = 4e-07
Identities = 24/45 (53%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Frame = +2
Query: 104 LPDLDNLLQCPVCYEIPTGHIFQCNEGHNVCGRCKVRLS-VCPVC 235
L DLD +L CP+C E T IFQC+ GH CG C +LS CP C
Sbjct: 30 LLDLD-ILDCPICCEALTSPIFQCDNGHLACGSCCPKLSNKCPAC 73
>At3g58040.1 68416.m06470 seven in absentia (SINA) family protein
similar to siah-1A protein [Mus musculus] GI:297035;
contains Pfam profile PF03145: Seven in absentia protein
family
Length = 308
Score = 48.8 bits (111), Expect = 3e-06
Identities = 19/40 (47%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = +2
Query: 122 LLQCPVCYEIPTGHIFQCNEGHNVCGRCKVRL-SVCPVCR 238
LL+CPVC + I QC GH +C CK+R+ + CP CR
Sbjct: 57 LLECPVCTNLMYPPIHQCPNGHTLCSNCKLRVQNTCPTCR 96
>At5g37890.1 68418.m04565 seven in absentia (SINA) protein, putative
similar to SIAH1 protein [Brassica napus var. napus]
GI:7657876; contains Pfam profile PF03145: Seven in
absentia protein family
Length = 286
Score = 48.4 bits (110), Expect = 4e-06
Identities = 22/45 (48%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Frame = +2
Query: 104 LPDLDNLLQCPVCYEIPTGHIFQCNEGHNVCGRCKVRL-SVCPVC 235
L DL+ +L CP+CYE T IFQC+ GH C C +L + CP C
Sbjct: 43 LMDLE-ILDCPICYEAFTIPIFQCDNGHLACSSCCPKLNNKCPAC 86
>At2g41980.1 68415.m05193 seven in absentia (SINA) family protein
similar to siah-1A protein [Mus musculus] GI:297035;
contains Pfam profile PF03145: Seven in absentia protein
family
Length = 305
Score = 48.4 bits (110), Expect = 4e-06
Identities = 19/40 (47%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = +2
Query: 122 LLQCPVCYEIPTGHIFQCNEGHNVCGRCKVRL-SVCPVCR 238
LL+CPVC + I QC GH +C CK+R+ + CP CR
Sbjct: 54 LLECPVCTNLMYPPIHQCPNGHTLCSSCKLRVQNTCPTCR 93
>At4g27880.1 68417.m04002 seven in absentia (SINA) family protein
similar to siah-1A protein [Mus musculus] GI:297035;
contains Pfam profile PF03145: Seven in absentia protein
family
Length = 327
Score = 47.2 bits (107), Expect = 9e-06
Identities = 20/40 (50%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = +2
Query: 122 LLQCPVCYEIPTGHIFQCNEGHNVCGRCKVRL-SVCPVCR 238
LL+CPVC I QC+ GH +C CKVR+ + CP CR
Sbjct: 61 LLECPVCTYSMYPPIHQCHNGHTLCSTCKVRVHNRCPTCR 100
>At5g37870.1 68418.m04561 seven in absentia (SINA) family protein
similar to SIAH1 protein [Brassica napus var. napus]
GI:7657876; contains Pfam profile PF03145: Seven in
absentia protein family
Length = 281
Score = 46.4 bits (105), Expect = 2e-05
Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +2
Query: 104 LPDLDNLLQCPVCYEIPTGHIFQCNEGHNVCGRCKVRL-SVCPVC 235
L DLD +L CP+CY+ +FQC GH C C +L + CP C
Sbjct: 37 LTDLD-ILDCPICYQALKIPVFQCGNGHLACSSCCPKLRNKCPAC 80
>At3g61790.1 68416.m06933 seven in absentia (SINA) family protein
similar to siah-1A protein [Mus musculus] GI:297035;
contains Pfam profile PF03145: Seven in absentia protein
family
Length = 326
Score = 46.4 bits (105), Expect = 2e-05
Identities = 19/40 (47%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +2
Query: 122 LLQCPVCYEIPTGHIFQCNEGHNVCGRCKVRL-SVCPVCR 238
LL+CPVC I QC+ GH +C CK R+ + CP CR
Sbjct: 60 LLECPVCTNSMYPPIHQCHNGHTLCSTCKARVHNRCPTCR 99
>At5g62800.1 68418.m07883 seven in absentia (SINA) family protein
similar to SIAH1 protein [Brassica napus var. napus]
GI:7657876; contains Pfam profile PF03145: Seven in
absentia protein family
Length = 348
Score = 46.0 bits (104), Expect = 2e-05
Identities = 23/49 (46%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Frame = +2
Query: 86 ENKVDELPDLDNLLQCPVCYEIPTGHIFQCNEGHNVCGRCKVRLS-VCP 229
E + +L DLD +L CPVC+E T FQC++GH VC C ++S CP
Sbjct: 29 ETRSAKLLDLD-VLDCPVCFEPLTIPTFQCDDGHIVCNFCFAKVSNKCP 76
>At3g01650.1 68416.m00096 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 489
Score = 45.2 bits (102), Expect = 3e-05
Identities = 18/47 (38%), Positives = 24/47 (51%)
Frame = +2
Query: 101 ELPDLDNLLQCPVCYEIPTGHIFQCNEGHNVCGRCKVRLSVCPVCRA 241
++ D++ CP+C P F C GH C C L VCP+CRA
Sbjct: 436 QMSSADDIQLCPICLSNPKNMAFGC--GHQTCCECGPDLKVCPICRA 480
>At1g66620.1 68414.m07570 seven in absentia (SINA) protein, putative
similar to SIAH1 protein [Brassica napus var. napus]
GI:7657876; contains Pfam profile PF03145: Seven in
absentia protein family
Length = 313
Score = 44.8 bits (101), Expect = 5e-05
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +2
Query: 119 NLLQCPVCYEIPTGHIFQCNEGHNVCGRCKVRL-SVCPVC 235
+LL CP+C T IFQC+ GH C C +L + CP C
Sbjct: 40 DLLDCPICCHALTSPIFQCDNGHIACSSCCTKLRNKCPSC 79
>At1g66610.1 68414.m07569 seven in absentia (SINA) protein, putative
similar to SIAH1 protein [Brassica napus var. napus]
GI:7657876; contains Pfam profile PF03145: Seven in
absentia protein family
Length = 366
Score = 43.2 bits (97), Expect = 1e-04
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +2
Query: 119 NLLQCPVCYEIPTGHIFQCNEGHNVCGRCKVRLS-VCPVC 235
+LL CP+C T IFQC++GH C C +S CP C
Sbjct: 52 DLLDCPICCNALTIPIFQCDKGHIACSSCCTNVSNKCPYC 91
>At1g66650.1 68414.m07573 seven in absentia (SINA) protein, putative
similar to SIAH2 protein [Brassica napus var. napus]
GI:7657878; contains Pfam profile PF03145: Seven in
absentia protein family
Length = 329
Score = 42.3 bits (95), Expect = 2e-04
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +2
Query: 104 LPDLDNLLQCPVCYEIPTGHIFQCNEGHNVCGRCKVRLSV-CPVCR 238
LP+ N+L+CP C++ IFQCN GH C C ++L C C+
Sbjct: 78 LPN-SNVLECPNCFDPLKKPIFQCNNGHLACFLCCIKLKKRCSFCK 122
>At1g66630.1 68414.m07571 seven in absentia (SINA) family protein
similar to SIAH1 protein [Brassica napus var. napus]
GI:7657876; contains Pfam profile PF03145: Seven in
absentia protein family
Length = 303
Score = 42.3 bits (95), Expect = 2e-04
Identities = 21/46 (45%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = +2
Query: 104 LPDLDNLLQCPVCYEIPTGHIFQCNEGHNVCGRC--KVRLSVCPVC 235
L +LD LL CP+CY I+QC+ GH C C KV+ CP C
Sbjct: 41 LLELD-LLDCPICYHKLGAPIYQCDNGHIACSSCCKKVKYK-CPYC 84
>At5g14420.4 68418.m01687 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 468
Score = 41.9 bits (94), Expect = 3e-04
Identities = 19/42 (45%), Positives = 22/42 (52%)
Frame = +2
Query: 116 DNLLQCPVCYEIPTGHIFQCNEGHNVCGRCKVRLSVCPVCRA 241
DN L CP+C P F C GH C C L +CP+CRA
Sbjct: 421 DNQL-CPICLSNPKDMAFGC--GHQTCCECGPDLQMCPICRA 459
>At5g14420.3 68418.m01686 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 468
Score = 41.9 bits (94), Expect = 3e-04
Identities = 19/42 (45%), Positives = 22/42 (52%)
Frame = +2
Query: 116 DNLLQCPVCYEIPTGHIFQCNEGHNVCGRCKVRLSVCPVCRA 241
DN L CP+C P F C GH C C L +CP+CRA
Sbjct: 421 DNQL-CPICLSNPKDMAFGC--GHQTCCECGPDLQMCPICRA 459
>At5g14420.2 68418.m01685 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 468
Score = 41.9 bits (94), Expect = 3e-04
Identities = 19/42 (45%), Positives = 22/42 (52%)
Frame = +2
Query: 116 DNLLQCPVCYEIPTGHIFQCNEGHNVCGRCKVRLSVCPVCRA 241
DN L CP+C P F C GH C C L +CP+CRA
Sbjct: 421 DNQL-CPICLSNPKDMAFGC--GHQTCCECGPDLQMCPICRA 459
>At5g14420.1 68418.m01684 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 468
Score = 41.9 bits (94), Expect = 3e-04
Identities = 19/42 (45%), Positives = 22/42 (52%)
Frame = +2
Query: 116 DNLLQCPVCYEIPTGHIFQCNEGHNVCGRCKVRLSVCPVCRA 241
DN L CP+C P F C GH C C L +CP+CRA
Sbjct: 421 DNQL-CPICLSNPKDMAFGC--GHQTCCECGPDLQMCPICRA 459
>At5g63970.1 68418.m08032 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 367
Score = 40.3 bits (90), Expect = 0.001
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +2
Query: 131 CPVCYEIPTGHIFQCNEGHNVCGRCKVRLSVCPVCR 238
CP+C P F C GH C C V ++ CP+CR
Sbjct: 323 CPICLTNPKDMAFSC--GHTTCKECGVVITTCPLCR 356
>At1g67800.3 68414.m07738 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 433
Score = 38.7 bits (86), Expect = 0.003
Identities = 16/37 (43%), Positives = 18/37 (48%)
Frame = +2
Query: 131 CPVCYEIPTGHIFQCNEGHNVCGRCKVRLSVCPVCRA 241
CPVC F C GH C C L VCP+CR+
Sbjct: 390 CPVCLVSAKNMAFNC--GHQTCAGCGEDLHVCPICRS 424
>At1g67800.2 68414.m07739 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 453
Score = 38.7 bits (86), Expect = 0.003
Identities = 16/37 (43%), Positives = 18/37 (48%)
Frame = +2
Query: 131 CPVCYEIPTGHIFQCNEGHNVCGRCKVRLSVCPVCRA 241
CPVC F C GH C C L VCP+CR+
Sbjct: 410 CPVCLVSAKNMAFNC--GHQTCAGCGEDLHVCPICRS 444
>At1g67800.1 68414.m07737 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 433
Score = 38.7 bits (86), Expect = 0.003
Identities = 16/37 (43%), Positives = 18/37 (48%)
Frame = +2
Query: 131 CPVCYEIPTGHIFQCNEGHNVCGRCKVRLSVCPVCRA 241
CPVC F C GH C C L VCP+CR+
Sbjct: 390 CPVCLVSAKNMAFNC--GHQTCAGCGEDLHVCPICRS 424
>At5g37930.1 68418.m04569 seven in absentia (SINA) family protein
similar to SIAH1 protein [Brassica napus var. napus]
GI:7657876; contains Pfam profile PF03145: Seven in
absentia protein family
Length = 349
Score = 38.3 bits (85), Expect = 0.004
Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = +2
Query: 119 NLLQCPVCYEIPTGHIFQCNEGHNVCGRC--KVRLSVCPVC 235
++L CP+C E IFQC+ GH C C KVR + CP C
Sbjct: 109 DVLDCPICCEPLKIPIFQCDNGHLACTLCCTKVR-NRCPSC 148
>At1g79380.1 68414.m09251 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 401
Score = 38.3 bits (85), Expect = 0.004
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +2
Query: 131 CPVCYEIPTGHIFQCNEGHNVCGRCKVRLSVCPVCR 238
CP+C F C GH CG C ++S CP+CR
Sbjct: 357 CPICLTNRKDVAFSC--GHMTCGDCGSKISNCPICR 390
>At4g39050.1 68417.m05531 kinesin-related protein (MKRP2) kinesin
motor protein - Ustilago maydis, PID:g2062750; identical
to cDNA MKRP2 mRNA for kinesin-related protein
GI:16902293, kinesin-related protein [Arabidopsis
thaliana] GI:16902294
Length = 1055
Score = 35.9 bits (79), Expect = 0.021
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +2
Query: 71 MSEIVENKVDELPDLD-NLLQCPVCYEIPTGHIFQCNEGHNVCGRCKVRLSVCPVCR 238
M E+ E ++ + D N C VC+E PT I +C C + S CP+CR
Sbjct: 987 MQEMKEKEMKSQANGDANSHICKVCFESPTAAILLPCRHFCLCKSCSLACSECPICR 1043
>At2g21380.1 68415.m02544 kinesin motor protein-related
Length = 1058
Score = 35.1 bits (77), Expect = 0.037
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +2
Query: 131 CPVCYEIPTGHIFQCNEGHNVCGRCKVRLSVCPVCR 238
C VC+E PT I +C C + S CP+CR
Sbjct: 1011 CKVCFESPTATILLPCRHFCLCKSCSLACSECPICR 1046
>At1g68820.1 68414.m07868 membrane protein, putative contains 7
transmembrane domains; similar to inhibitor of
apoptosis-2 IAP-2 (GI:20043383) [Mamestra configurata
nucleopolyhedrovirus]
Length = 468
Score = 34.7 bits (76), Expect = 0.049
Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = +2
Query: 74 SEIVENKVDELPDLDN-LLQCPVCYEIPTGHIFQCNEGHNVCGRCKVRLSVCPVCRAL 244
++I E L N + C VC+E P + H +C C + CP+CR L
Sbjct: 401 TDITSYSQQEYERLQNEKILCRVCFEDPINVVLLPCRHHVLCSTCCEKCKKCPICRVL 458
>At3g14970.1 68416.m01893 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 220
Score = 31.9 bits (69), Expect = 0.35
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +2
Query: 149 IPTGHIFQCNEGHNVCGRCKVRLS-VCPVCRALF 247
+P H+F H CG +R S +CPVCRA+F
Sbjct: 190 MPCSHVF-----HRTCGEDWLRCSGICPVCRAMF 218
>At2g32950.1 68415.m04039 COP1 regulatory protein photomorphogenesis
repressor; identical to COP1 regulatory protein/FUSCA
protein FUS1 GI:402685 SP:P43254
Length = 675
Score = 31.9 bits (69), Expect = 0.35
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Frame = +2
Query: 107 PDLDNLLQCPVCYEIPTGHIFQCNEGHNVCGRCKV----RLSVCPVC 235
PDLD L CP+C +I F GH+ C C + S CP C
Sbjct: 44 PDLDKDLLCPICMQI-IKDAFLTACGHSFCYMCIITHLRNKSDCPCC 89
>At3g15740.1 68416.m01994 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 224
Score = 31.5 bits (68), Expect = 0.46
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +2
Query: 149 IPTGHIFQCNEGHNVCGRCKVRLS-VCPVCRALF 247
+P H+F H CG +R S +CPVCRALF
Sbjct: 194 MPCSHVF-----HRTCGEEWLRNSGICPVCRALF 222
>At4g24560.1 68417.m03520 ubiquitin-specific protease 16, putative
(UBP16) similar to ubiquitin-specific protease 16
GI:11993477 [Arabidopsis thaliana]
Length = 1008
Score = 29.9 bits (64), Expect = 1.4
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = +2
Query: 113 LDNLLQCPVCYEIPTGHIFQCNEGHNVCGRCKV 211
+ N+ CPVCY + T +C G+C++
Sbjct: 68 VSNVFHCPVCYCLATTRCSRCKAVRYCSGKCQI 100
>At2g40770.1 68415.m05030 SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger (C3HC4 type RING
finger) family protein low similarity to SP|P36607 DNA
repair protein rad8 {Schizosaccharomyces pombe}; contains
Pfam profiles PF00271: Helicase conserved C-terminal
domain, PF00176: SNF2 family N-terminal domain, PF00628:
PHD-finger, PF00097: Zinc finger, C3HC4 type (RING
finger)
Length = 1648
Score = 29.9 bits (64), Expect = 1.4
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
Frame = +2
Query: 53 PTLFYIMSEIVENKVDELPDLDNLLQ----CPVCYEIPTGH--IFQCNEGHNVCGRC 205
P L + E V+ + +NLL+ CP+C+EI +FQC GH+ C C
Sbjct: 1298 PDLSSPIHETVDASDPAEQESENLLKRDEACPICHEILRNQKMVFQC--GHSTCCNC 1352
>At1g63900.1 68414.m07235 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 343
Score = 29.1 bits (62), Expect = 2.4
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = +2
Query: 92 KVDELPDLDNLLQCPVCYEIPTGHIF-QCNEGHNVC-GRCKVRLSVCPVCR 238
K D +PDL C +C E +F C GH C C L+ CP+CR
Sbjct: 288 KEDAVPDL-----CVICLEQEYNAVFVPC--GHMCCCTACSSHLTSCPLCR 331
>At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) family
protein contains Pfam profile: PF00097 zinc finger, C3HC4
type (RING finger)
Length = 4706
Score = 28.7 bits (61), Expect = 3.2
Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Frame = +2
Query: 62 FYIMSEIVENKVDELPDLDNLLQCPVCY--EIPTGHIFQCNEGHNVCGRCKVRLSVCPVC 235
F + E E + E + C +C E+ I C GH +C C +S CP C
Sbjct: 4637 FLLEQERAEASMKEAETAKSQWLCQICQTKEVEVT-IVPC--GHVLCRHCSTSVSRCPFC 4693
Query: 236 R 238
R
Sbjct: 4694 R 4694
>At3g13590.1 68416.m01711 DC1 domain-containing protein contains
Pfam protein PF03107 DC1 domain
Length = 513
Score = 28.7 bits (61), Expect = 3.2
Identities = 8/21 (38%), Positives = 16/21 (76%)
Frame = +2
Query: 161 HIFQCNEGHNVCGRCKVRLSV 223
H+F+ ++G N+CG C+ ++ V
Sbjct: 146 HVFRISDGDNICGVCRSQVDV 166
>At5g42200.1 68418.m05136 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 163
Score = 28.3 bits (60), Expect = 4.3
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 7/54 (12%)
Frame = +2
Query: 101 ELPDLDNLLQCPVCYE-IPTGHIFQ----CNEG-HNVCGRCKV-RLSVCPVCRA 241
EL + +C VC E I +G + CN G H +C + +VCPVCRA
Sbjct: 94 ELAVIARSTECAVCLEDIESGQSTRLVPGCNHGFHQLCADTWLSNHTVCPVCRA 147
>At3g52410.1 68416.m05764 hypothetical protein contains Pfam profile
PF03778: Protein of unknown function (DUF321)
Length = 206
Score = 28.3 bits (60), Expect = 4.3
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +1
Query: 196 WQM*SSAFCLPGMQGTIFWNRNYAMEELIANVRKLRAFKLGGKVT 330
W+ F + ++ +FW NY L + KLR + GGK T
Sbjct: 35 WENHGFTFLVEKLRVYVFWRENYEFTFLAS---KLRVYVFGGKTT 76
>At2g25200.1 68415.m03014 expressed protein
Length = 354
Score = 28.3 bits (60), Expect = 4.3
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +3
Query: 426 SKFSSGPNPCKGFFVALCKNG 488
+KF SGP+P GF+VA+ +G
Sbjct: 135 AKFGSGPDPESGFYVAVFVSG 155
>At1g18470.1 68414.m02304 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 467
Score = 28.3 bits (60), Expect = 4.3
Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Frame = +2
Query: 74 SEIVENKVDELPDLDN-LLQCPVCYEIPTGHIFQCNEGHNVCGRCKVRLSVCPVCR 238
+EI + E L N + C VC+E + +C C + + CP+CR
Sbjct: 400 TEITKFSQQEYERLQNEKVLCRVCFEKDISLVLLPCRHRVLCRTCADKCTTCPICR 455
>At1g55255.1 68414.m06311 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 383
Score = 27.9 bits (59), Expect = 5.7
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
Frame = +2
Query: 98 DELPDLDNLLQCPVCYEIPTG-HIFQCNEGHNVCGRC-----KVRLSVCPVCRALF 247
+E+ + N+L+C VC++ P I +C H C +C ++R CP C F
Sbjct: 320 EEVKNCKNILKCGVCFDRPKEVVIVKCY--HLFCQQCIQRSLEIRHRKCPGCGTAF 373
>At2g39810.1 68415.m04890 expressed protein
Length = 865
Score = 27.5 bits (58), Expect = 7.5
Identities = 10/21 (47%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Frame = +2
Query: 182 GH-NVCGRCKVRLSVCPVCRA 241
GH ++C C R VCP+CR+
Sbjct: 74 GHASLCTECCQRCDVCPICRS 94
>At1g75850.1 68414.m08810 vacuolar protein sorting-associated
protein 35 family protein / VPS35 family protein similar
to vacuolar protein sorting 35 [Mus musculus]
GI:11875394; contains Pfam profile PF03635: Vacuolar
protein sorting-associated protein 35
Length = 838
Score = 27.5 bits (58), Expect = 7.5
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 370 RDSGSDNAEYLGEDENNDNQNSVVALTHV 456
+D NAE L E++ + QNSV L H+
Sbjct: 492 KDLDETNAEELDEEDFQEEQNSVARLIHM 520
>At5g27970.1 68418.m03369 expressed protein
Length = 1629
Score = 27.1 bits (57), Expect = 9.9
Identities = 13/54 (24%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +1
Query: 316 GGKVTRGLLASDSSSTPARDSGSDNAEYLGEDE-NNDNQNSVVALTHVKAFSLL 474
G V +G +++ STP + +G D +++G + +D + + + H K L+
Sbjct: 926 GSLVEKGSGFNNADSTPQQTNGEDGEKHMGSNSGKSDYEAPIQVVNHEKLLFLV 979
>At4g33760.1 68417.m04793 tRNA synthetase class II (D, K and N)
family protein similar to SP|P36419 Aspartyl-tRNA
synthetase (EC 6.1.1.12) (Aspartate--tRNA ligase)
(AspRS) {Thermus thermophilus}; contains Pfam profile
PF00152: tRNA synthetases class II (D, K and N)
Length = 664
Score = 27.1 bits (57), Expect = 9.9
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -2
Query: 229 RADRKPNFTSATYIMTFIALENM 161
RADR+P FT M F+ +E+M
Sbjct: 304 RADRQPEFTQLDMEMAFMPMEDM 326
>At4g09840.1 68417.m01613 expressed protein
Length = 106
Score = 27.1 bits (57), Expect = 9.9
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +1
Query: 313 LGGKVTRGLLASDSSSTPARDSGSDNAEYLGEDENNDNQNS 435
+GG +GL +D + P+ +G ++E E E D+Q S
Sbjct: 39 VGGNNQQGLRGNDQQAVPSAVAGVSDSEEDEEHEAGDDQQS 79
>At3g47990.1 68416.m05232 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 358
Score = 27.1 bits (57), Expect = 9.9
Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 12/86 (13%)
Frame = +2
Query: 74 SEIVENKVDELPDL------DNLLQCPVCYE-IPTGHIFQ---CNEGHNV-CGRCKVRLS 220
+E VE + ELP D+ +C +C E GH + C +V C +RL+
Sbjct: 210 TEAVEALIQELPKFRLKAVPDDCGECLICLEEFHIGHEVRGLPCAHNFHVECIDQWLRLN 269
Query: 221 V-CPVCRALFFGTGTMPWKSSLQMSG 295
V CP CR F + S+LQ SG
Sbjct: 270 VKCPRCRCSVFPDLDLSALSNLQSSG 295
>At1g11905.1 68414.m01373 expressed protein
Length = 228
Score = 27.1 bits (57), Expect = 9.9
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +3
Query: 66 T*CRR*LKIRLTNCQTWITYFSVQYVMKSLQVIFSN 173
T C R + TNC WI F VQ + L+ +SN
Sbjct: 192 TGCLRKTRCCETNCTLWIRNFRVQAAKRILERPYSN 227
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,060,709
Number of Sequences: 28952
Number of extensions: 231448
Number of successful extensions: 794
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 792
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1236350304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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