Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0974
         (570 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   3.2  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   3.2  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    21   9.8  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +3

Query: 45  PCRPTNEALARRGRHG 92
           PCRP  +   RR  HG
Sbjct: 589 PCRPREQLTWRRNFHG 604


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +3

Query: 45  PCRPTNEALARRGRHG 92
           PCRP  +   RR  HG
Sbjct: 481 PCRPREQLTWRRNFHG 496


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = +3

Query: 81  GRHGTTVAYIVDDSGSDHKFP 143
           G H   V  ++DD GS    P
Sbjct: 401 GYHQNEVGGVIDDGGSGQNQP 421


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,393
Number of Sequences: 336
Number of extensions: 1454
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14099535
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)