Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0974
         (570 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0350 + 22234632-22235145,22235277-22236209,22237253-222373...    28   4.6  
05_06_0142 + 25968828-25969157,25969283-25969447,25969564-25969884     28   6.0  
02_01_0667 - 4958924-4959523                                           28   6.0  

>02_04_0350 +
           22234632-22235145,22235277-22236209,22237253-22237340,
           22237859-22237865
          Length = 513

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 95  GSVTTTPRQSLVCWSAGCAACRRGWLW 15
           GS+TT     LV ++ G A C  G+LW
Sbjct: 305 GSITTMSNDELVEFAWGLANCGHGFLW 331


>05_06_0142 + 25968828-25969157,25969283-25969447,25969564-25969884
          Length = 271

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +3

Query: 51  RPTNEALARRGRHGTTVAYIVDDSGS 128
           RP+  A  RR RHGT VAY+  +  S
Sbjct: 22  RPSPSAPNRRRRHGTVVAYMEPNPNS 47


>02_01_0667 - 4958924-4959523
          Length = 199

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = +3

Query: 3   FGTRPKPTSPARGAPCRPTNEALARRGRHGTTVAYIVDDSGSD 131
           FGTRP+P  P R  P  P  +   R     +  A +VDD  +D
Sbjct: 114 FGTRPRPVLPPRPPPPPPIPDGDCRSDCGSS--ASVVDDDCAD 154


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,015,025
Number of Sequences: 37544
Number of extensions: 168024
Number of successful extensions: 403
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 403
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)