Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0973
         (501 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase Wis1|Schizosaccha...    27   1.2  
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf...    27   2.1  
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual           27   2.1  
SPBC16D10.07c |sir2||Sir2 family histone deacetylase Sir2|Schizo...    26   2.8  
SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1...    25   4.8  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    25   8.4  
SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase...    25   8.4  
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos...    25   8.4  

>SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase
           Wis1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 605

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +3

Query: 66  SIPPGVSPHISKLIKICMNEDPGKRPSF 149
           S+P   SP     +  C+N++P  RP +
Sbjct: 543 SLPDSFSPEARDFVNKCLNKNPSLRPDY 570


>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
           Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1339

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = -2

Query: 200 RSTKSAFHLL*NR*DHFERWSFPGILVHADLDEFRDVRRHARRYAY 63
           R  K  F LL +  +H  R S P  L H  +  F D  + +R+Y Y
Sbjct: 375 RFNKPLFKLLGSLVEH--RSSVPNHLSHMSITRFEDKTKKSRQYRY 418


>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1097

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
 Frame = +2

Query: 23  NGVR--HEDSA*RSSYKHTSGRVASHLETHQDLHERGSRETTIFRNDPTDFREDETLI 190
           NG++  HE S+ +   K       SH+++ +D+H   S+   +  N+  +  ED TL+
Sbjct: 2   NGLKREHESSSSQDGSKTPETEYDSHVDSIEDIHSLASKRKKL--NEKKENLEDLTLL 57


>SPBC16D10.07c |sir2||Sir2 family histone deacetylase
           Sir2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -2

Query: 149 ERWSFPGILVHADLDEFRDVRRHARRYAYTKTFKRYL 39
           + W  P     +DLDE  ++ R+ R   Y K  ++YL
Sbjct: 56  DEWDKPETENISDLDERSEMVRYLRASGYAKFLEKYL 92


>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +2

Query: 11  GSVTNGVRHEDSA*RSSYKHTSGRVASHLETHQDLH 118
           G++ N      S   SSY  T+    S + +HQ+LH
Sbjct: 608 GAMANVSAGPSSVRSSSYNSTASESKSEITSHQNLH 643


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
            Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 87   PHISKLIKICMNEDPGKRPSFEMILPILEKMKR*F 191
            PH+ K+  I  ++ PG   SF  I  I E+++  F
Sbjct: 1475 PHLKKVEAIIYDKLPGSDMSFPSISKIYEELRSKF 1509


>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
            Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1448

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -2

Query: 125  LVHADLDEFRDVRRHARRYAYT 60
            +V ADL E  D+  H   Y YT
Sbjct: 1263 IVRADLQELMDMDLHGAPYGYT 1284


>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
           Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 953

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = +3

Query: 75  PGVSPHISKLIKICMNEDPGKRPSFEMILPILEKMK 182
           P  S  + + I  C+ E P  RP+    L  + +M+
Sbjct: 293 PRYSDRMKRFIATCLQEQPSHRPNIYQTLKEIMEMQ 328


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,583,640
Number of Sequences: 5004
Number of extensions: 23885
Number of successful extensions: 55
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)