Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0971
         (562 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q2F5W4 Cluster: Sericotropin; n=4; Ditrysia|Rep: Serico...    44   0.002
UniRef50_A2FHZ9 Cluster: Beige/BEACH domain containing protein; ...    34   2.0  
UniRef50_Q8I3T3 Cluster: Putative uncharacterized protein PFE087...    32   8.0  

>UniRef50_Q2F5W4 Cluster: Sericotropin; n=4; Ditrysia|Rep:
           Sericotropin - Bombyx mori (Silk moth)
          Length = 133

 Score = 44.0 bits (99), Expect = 0.002
 Identities = 26/47 (55%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +3

Query: 411 VVXRXLAHALTDEXNENLMKXXAXCSSXXKL-XNIVNILXTGDFXTE 548
           VV   LA ALTDE  ENL K  A C S  K    +VN L TGDF TE
Sbjct: 8   VVCVVLAQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTE 54


>UniRef50_A2FHZ9 Cluster: Beige/BEACH domain containing protein; n=1;
            Trichomonas vaginalis G3|Rep: Beige/BEACH domain
            containing protein - Trichomonas vaginalis G3
          Length = 2803

 Score = 34.3 bits (75), Expect = 2.0
 Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = -3

Query: 143  DICSRSTITCLINLVLYSIYLHFLYVC-LVSYLNLEIKLVCS 21
            DI S   +TC   L+ Y IY HF  +C ++S  NL+ +L+ S
Sbjct: 1315 DIISHLLMTCNAKLITYHIYAHFYGICEVISESNLQSQLLDS 1356


>UniRef50_Q8I3T3 Cluster: Putative uncharacterized protein PFE0875c;
           n=2; Plasmodium|Rep: Putative uncharacterized protein
           PFE0875c - Plasmodium falciparum (isolate 3D7)
          Length = 895

 Score = 32.3 bits (70), Expect = 8.0
 Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
 Frame = +2

Query: 242 KVLYPEVFLKYCEWYRVFDVSSIKSYTFNLNLTYSYXLSN-ESLIKIHCIMKTFIVFRR 415
           +++YP+ F+KY E  R F    +K    N+N  Y+Y +   ++LIKI   +   I F++
Sbjct: 109 ELMYPDGFIKYIEKGREF----LKRSQMNINEYYNYKIEKPDNLIKIKFHLTNDITFKK 163


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 423,613,274
Number of Sequences: 1657284
Number of extensions: 6733609
Number of successful extensions: 13776
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13772
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 37488397230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)