Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0971
         (562 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb...    30   0.20 
SPBC651.03c |gyp10||GTPase activating protein Gyp10|Schizosaccha...    25   5.8  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   7.6  
SPCC1322.07c |mug150||sequence orphan|Schizosaccharomyces pombe|...    25   7.6  
SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MB...    25   7.6  

>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 840

 Score = 30.3 bits (65), Expect = 0.20
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = -2

Query: 183 KQFMQCNRTYFSLRYLLSKYDYVFNQLSIIFHLLTFF 73
           +Q ++ NRT F L Y++ K+   FN LS I   +T +
Sbjct: 37  EQLLEKNRTDFKLMYVIVKFYRWFNNLSFITRWITIW 73


>SPBC651.03c |gyp10||GTPase activating protein
           Gyp10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 373

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = -2

Query: 183 KQFMQCNRTYFSLRYLLSKYDYVFNQLSIIFHLLTFFI 70
           K  +QC   YF+L +L++ + +  + +S++  L  FFI
Sbjct: 183 KADIQC---YFALSWLITWFAHDVSDISVVCRLFDFFI 217


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -2

Query: 153 FSLRYLLSKYDYV-FNQLSIIFHLLTFFICVSCVLS 49
           FS  + LS+   V F+   I+  L  FF+CV   LS
Sbjct: 133 FSFLFFLSQIFIVYFSSFPILHFLFFFFLCVCVFLS 168


>SPCC1322.07c |mug150||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 104

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 137 CSRSTITCLINLVLYSIYLHFLY 69
           CSR  +  L N+++ S YL+ LY
Sbjct: 24  CSRKNMFFLKNIIVLSNYLYLLY 46


>SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 588

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 8/30 (26%), Positives = 20/30 (66%)
 Frame = +2

Query: 281 WYRVFDVSSIKSYTFNLNLTYSYXLSNESL 370
           WY +F+++ ++  +FN++  +S   ++E L
Sbjct: 237 WYVLFNITMLRLVSFNMDYYWSLKHNSEKL 266


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,882,877
Number of Sequences: 5004
Number of extensions: 32795
Number of successful extensions: 66
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)