Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0971
         (562 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19418| Best HMM Match : Mucin (HMM E-Value=0.024)                   27   7.9  
SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.)                27   7.9  

>SB_19418| Best HMM Match : Mucin (HMM E-Value=0.024)
          Length = 1213

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +2

Query: 266 LKYCEWY-RVFDVSSIKSYTFNLNLTY 343
           LKYCEWY  VF   SI+ + +  N  Y
Sbjct: 9   LKYCEWYMEVFGFKSIQIFNWT-NFVY 34


>SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2656

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = -3

Query: 227  LSVSIQ-MTFRHLHKLNSLCNVIGRISH*DICSRSTITCLINLVLYSIYLHFLYVCLVSY 51
            LS+S++ +  R +H L  LC +  RI    +       C I +   S+ LH+L +C V  
Sbjct: 1782 LSLSLRYLCLRAMHYLY-LCGI--RIFALSVSLHYLYPCTICIFALSVSLHYLSLCAVCI 1838

Query: 50   LNLEIKL 30
            L L + L
Sbjct: 1839 LALFVSL 1845


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,372,976
Number of Sequences: 59808
Number of extensions: 218535
Number of successful extensions: 338
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 338
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1312894764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)