Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0971
         (562 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038622-1|AAB94152.1|  358|Caenorhabditis elegans Hypothetical ...    29   2.3  
U23170-4|AAC46701.1|  463|Caenorhabditis elegans Hypothetical pr...    28   5.3  
Z92973-4|CAE18004.2|  328|Caenorhabditis elegans Hypothetical pr...    27   7.0  

>AF038622-1|AAB94152.1|  358|Caenorhabditis elegans Hypothetical
           protein R07C12.3 protein.
          Length = 358

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = +2

Query: 299 VSSIKSYTFNLNLTYSYXLSNESLIKIHCIMKTFIVFRRXAXLGSC 436
           +S I +  +N+ L YSY  S+ S IKI   + T+I+ R  A    C
Sbjct: 301 ISEIYAAIYNMTLDYSY--SDNSPIKIQIRLYTWIIRRIFAEFAVC 344


>U23170-4|AAC46701.1|  463|Caenorhabditis elegans Hypothetical
           protein F58F12.3 protein.
          Length = 463

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 20  YYTPILFQD*DRTQDTHIKNVSKWN 94
           +YT     D +R  DT IK+++KWN
Sbjct: 431 FYTTCSKSDSERYDDTFIKHMAKWN 455


>Z92973-4|CAE18004.2|  328|Caenorhabditis elegans Hypothetical
           protein Y6G8.4 protein.
          Length = 328

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 17/57 (29%), Positives = 28/57 (49%)
 Frame = +2

Query: 239 LKVLYPEVFLKYCEWYRVFDVSSIKSYTFNLNLTYSYXLSNESLIKIHCIMKTFIVF 409
           +K  Y  V + Y  ++ V  + S+   TF     +S  LSN S  K H ++  F++F
Sbjct: 55  MKQFYKMVKIAYFCFFMVIVIGSVILLTF-----FSNILSNPSFEKFHIVLIIFLLF 106


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,248,118
Number of Sequences: 27780
Number of extensions: 177337
Number of successful extensions: 418
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 418
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)