Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0971
         (562 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   2.1  
X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    21   6.4  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    21   6.4  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    21   6.4  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = -1

Query: 421 RXTTEHDKSLHDA-VDFDERLIR 356
           R T++HD SL+D  + F ER +R
Sbjct: 597 RLTSKHDNSLYDEYIPFLERELR 619


>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -3

Query: 170 NVIGRISH*DICSRSTITC 114
           N +GR  H D C R+   C
Sbjct: 47  NELGRFKHTDACCRTHDMC 65


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -3

Query: 170 NVIGRISH*DICSRSTITC 114
           N +GR  H D C R+   C
Sbjct: 52  NELGRFKHTDACCRTHDMC 70


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -3

Query: 170 NVIGRISH*DICSRSTITC 114
           N +GR  H D C R+   C
Sbjct: 52  NELGRFKHTDACCRTHDMC 70


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,709
Number of Sequences: 438
Number of extensions: 1949
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16195212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)