Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0971
         (562 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g20790.1 68414.m02603 F-box family protein contains Pfam:PF00...    28   3.7  
At1g73430.1 68414.m08500 sec34-like family protein contains Pfam...    28   4.9  
At3g24495.1 68416.m03072 DNA mismatch repair protein MSH6-2 (MSH...    27   8.6  

>At1g20790.1 68414.m02603 F-box family protein contains Pfam:PF00646
           F-box domain
          Length = 435

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = -3

Query: 218 SIQMTFRHLHKLNSLCNVIGRISH*DICSRSTITCLIN-LVLYSIYLHF 75
           +I   F+++  L +LCN++G  S   + S + I C+ N L     +LH+
Sbjct: 70  AISRLFKNMTPLKNLCNILGSCSGLVLLSINGILCVANPLTKKFRFLHY 118


>At1g73430.1 68414.m08500 sec34-like family protein contains Pfam
           PF04136: Sec34-like family profile; similar to Conserved
           oligomeric Golgi complex component 3 (Vesicle docking
           protein SEC34 homolog) (p94) (Swiss-Prot:Q96JB2) [Homo
           sapiens]
          Length = 784

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +1

Query: 73  KKCK*MEYNTKLIKHVIVLREQISQ*EIRPITLHK 177
           K+   M+    LIKH+++LREQI+  +I     HK
Sbjct: 554 KRSTTMDGQLFLIKHLLILREQIAPFDIEFSVTHK 588


>At3g24495.1 68416.m03072 DNA mismatch repair protein MSH6-2 (MSH7)
           identical to SP|Q9SMV7 DNA mismatch repair protein
           MSH6-2 (AtMsh6-2) (MutS homolog 7) {Arabidopsis
           thaliana}; GC donor splice site at exon 11
          Length = 1109

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = -3

Query: 224 SVSIQMTFRHLHKLNSLCNVIGRISH*DICSRSTITCLI 108
           S S+Q+T ++LHKL  L  ++GRI      S S +  L+
Sbjct: 622 SESMQITGQYLHKLPDLERLLGRIKSSVRSSASVLPALL 660


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,327,522
Number of Sequences: 28952
Number of extensions: 151885
Number of successful extensions: 282
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 277
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 282
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1072696904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)