Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0969
         (511 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.12c |||NADP-specific glutamate dehydrogenase |Schizosacc...    38   7e-04
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    27   2.2  
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    26   3.8  
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo...    25   5.0  
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   6.6  
SPAC823.09c |||L-asparaginase |Schizosaccharomyces pombe|chr 1||...    25   6.6  
SPBC3B8.03 |||saccharopine dehydrogenase |Schizosaccharomyces po...    25   8.7  
SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces...    25   8.7  

>SPCC622.12c |||NADP-specific glutamate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 451

 Score = 38.3 bits (85), Expect = 7e-04
 Identities = 18/47 (38%), Positives = 29/47 (61%)
 Frame = +3

Query: 9   GAKXGIKINPKEYSEHELEKITRRFTLELAKKGFIGPGVDVPAPDMG 149
           G K G   +PK  S++E+ + ++ F  +L +  +IGP  DVPA D+G
Sbjct: 111 GGKGGSDFDPKGKSDNEIRRFSQAFMRQLFR--YIGPQTDVPAGDIG 155


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
           Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +2

Query: 92  TCQKRIHWAWRG 127
           TC +R+ WAWRG
Sbjct: 662 TCDRRMVWAWRG 673


>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1159

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -1

Query: 163  SRSPVPMSGAGTSTPGPMNPF 101
            + SP P S  GTSTP P + F
Sbjct: 1003 NNSPQPASMFGTSTPAPSSAF 1023


>SPAPB8E5.07c |||ribosome biogenesis protein
           Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1163

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
 Frame = +1

Query: 73  LVVSPLNLP--KKDSLGLAWMSPLL 141
           L V PLNL    KD++G AW+ P+L
Sbjct: 444 LRVLPLNLELNDKDAVGRAWLLPVL 468


>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 19/74 (25%), Positives = 29/74 (39%), Gaps = 2/74 (2%)
 Frame = +1

Query: 130 SPLLTWVPANEKCLGSPXLMRRPSVXKTSTLTPAS--LANLLTXWHXRQSFXHGXGQYST 303
           SP    +P + K   S  L+  PS+   +   PAS  LA ++T  +      H    Y T
Sbjct: 294 SPPFITIPQSIKNTNSNFLLSSPSLFSDTRTRPASYALALIITVPYEYDEIVHPVSTYYT 353

Query: 304 XWRTXSTKSLHELD 345
                +     E+D
Sbjct: 354 MLSNFTLSLQKEID 367


>SPAC823.09c |||L-asparaginase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 285

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +1

Query: 55  MNWKRSLVVSPLNLPKKDSLGL 120
           + WK  L  +P+NL  +D++G+
Sbjct: 158 IKWKEILYQNPINLSSQDTIGV 179


>SPBC3B8.03 |||saccharopine dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 450

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +3

Query: 3   ARGAKXGIKINPKEYSEHELEKITRRFTLELAKKGFIGPG 122
           +RG    ++ + K Y   +L +I  +  +E AK  FI PG
Sbjct: 175 SRGVLLALRNSAKFYENGKLVEIDGKDLMETAKPYFIYPG 214


>SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 475

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 148 PMSGAGTSTPGPMNPFLASS 89
           PM G+  +  GP+NP  ASS
Sbjct: 409 PMFGSSNTIDGPINPIGASS 428


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.130    0.424 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,659,325
Number of Sequences: 5004
Number of extensions: 27852
Number of successful extensions: 108
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)