Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0969
(511 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0144 + 26258841-26258948,26259099-26259212,26259335-262595... 74 6e-14
04_04_0678 + 27207340-27207447,27207555-27207668,27209111-272093... 73 2e-13
03_06_0282 - 32824950-32825135,32825247-32825505,32825651-328259... 70 9e-13
01_05_0337 + 21115388-21115961,21116471-21116597,21116683-211168... 46 1e-05
06_03_0810 - 24817268-24817350,24817547-24817697,24818441-248185... 30 1.2
11_06_0074 - 19821699-19823702 29 2.9
01_01_0104 + 780442-781273,782514-783424 28 3.8
08_01_0089 - 646310-646397,646566-647932 28 5.0
04_03_0690 + 18751601-18753667 28 5.0
01_06_0580 - 30380260-30380747,30380816-30381107 28 5.0
01_01_0241 + 1992553-1993231,1993820-1993918,1994611-1994649,199... 28 5.0
02_04_0104 + 19769744-19769893,19770014-19770252,19771000-197710... 27 6.6
01_01_0154 - 1355601-1356102,1356197-1356389,1356465-1356520,135... 27 8.8
>02_05_0144 +
26258841-26258948,26259099-26259212,26259335-26259556,
26259660-26259734,26259827-26259943,26260046-26260296,
26260833-26260908,26261045-26261131,26261216-26261401
Length = 411
Score = 74.1 bits (174), Expect = 6e-14
Identities = 44/106 (41%), Positives = 56/106 (52%)
Frame = +3
Query: 9 GAKXGIKINPKEYSEHELEKITRRFTLELAKKGFIGPGVDVPAPDMGTGEREMSWIADXY 188
GAK GI P E S ELE++TR FT ++ IG DVPAPDMGT + M+WI D Y
Sbjct: 100 GAKGGIGCTPGELSRSELERLTRVFTQKI--HDLIGINTDVPAPDMGTNAQTMAWILDEY 157
Query: 189 AKTVGFXDINAHACVTGKPINXVASTAEFQXRAXAVFHGLENXINE 326
+K G ++ A VTGKPI+ S V + E + E
Sbjct: 158 SKFHG----HSPAVVTGKPIDLGGSLGRDAATGRGVMYATEALLTE 199
>04_04_0678 +
27207340-27207447,27207555-27207668,27209111-27209332,
27209407-27209481,27209569-27209685,27210145-27210395,
27210686-27210761,27210862-27210948,27211037-27211222
Length = 411
Score = 72.5 bits (170), Expect = 2e-13
Identities = 44/106 (41%), Positives = 56/106 (52%)
Frame = +3
Query: 9 GAKXGIKINPKEYSEHELEKITRRFTLELAKKGFIGPGVDVPAPDMGTGEREMSWIADXY 188
GAK GI P E S ELE++TR FT ++ IG DVPAPDMGT + M+WI D Y
Sbjct: 100 GAKGGIGCAPGELSTSELERLTRVFTQKI--HDLIGAHTDVPAPDMGTNSQTMAWILDEY 157
Query: 189 AKTVGFXDINAHACVTGKPINXVASTAEFQXRAXAVFHGLENXINE 326
+K G ++ A VTGKPI+ S V + E + E
Sbjct: 158 SKFHG----HSPAVVTGKPIDLGGSLGRDAATGRGVMYATEALLAE 199
>03_06_0282 -
32824950-32825135,32825247-32825505,32825651-32825901,
32826309-32826425,32826613-32826687,32826788-32827009,
32827396-32827509,32827694-32827801
Length = 443
Score = 70.1 bits (164), Expect = 9e-13
Identities = 42/106 (39%), Positives = 56/106 (52%)
Frame = +3
Query: 9 GAKXGIKINPKEYSEHELEKITRRFTLELAKKGFIGPGVDVPAPDMGTGEREMSWIADXY 188
GAK GI +P + S ELE++TR FT ++ IG DVPAPDMGT + M+WI D Y
Sbjct: 100 GAKGGIGCSPGDLSISELERLTRVFTQKI--HDLIGIHTDVPAPDMGTNSQTMAWILDEY 157
Query: 189 AKTVGFXDINAHACVTGKPINXVASTAEFQXRAXAVFHGLENXINE 326
+K G+ + A VTGKP++ S V E + E
Sbjct: 158 SKFHGY----SPAVVTGKPVDLGGSLGRDAATGRGVLFATEALLAE 199
>01_05_0337 +
21115388-21115961,21116471-21116597,21116683-21116884,
21117460-21117546,21117622-21117681,21117800-21117886,
21118451-21118522,21118675-21118730,21118812-21118897,
21119427-21119517,21119593-21119750,21119827-21119918,
21120110-21120190,21120282-21120479
Length = 656
Score = 46.4 bits (105), Expect = 1e-05
Identities = 24/65 (36%), Positives = 35/65 (53%)
Frame = +3
Query: 9 GAKXGIKINPKEYSEHELEKITRRFTLELAKKGFIGPGVDVPAPDMGTGEREMSWIADXY 188
GA G +PK SE E+ + + F EL + ++GP D PA D+G G REM ++ Y
Sbjct: 314 GAAGGSDFDPKGKSESEIMRFCQSFMDELYR--YLGPDQDFPAEDVGVGPREMGYLFGQY 371
Query: 189 AKTVG 203
+ G
Sbjct: 372 RRLSG 376
>06_03_0810 - 24817268-24817350,24817547-24817697,24818441-24818542,
24818722-24818802,24818900-24819020,24819284-24819401,
24819514-24819637,24819898-24819963,24820117-24820407,
24820455-24820592,24820967-24821116,24821240-24821410,
24821543-24821746,24821880-24822104,24822461-24822595,
24822995-24823096,24823586-24823882,24823979-24824167,
24824581-24824628,24824872-24825070,24825501-24825730,
24826373-24826568,24826695-24826882
Length = 1202
Score = 29.9 bits (64), Expect = 1.2
Identities = 19/63 (30%), Positives = 28/63 (44%)
Frame = +3
Query: 42 EYSEHELEKITRRFTLELAKKGFIGPGVDVPAPDMGTGEREMSWIADXYAKTVGFXDINA 221
E S H L+K+T + + F+G ++V T E S + D Y TV D +
Sbjct: 893 EPSPHSLQKLTLQSVKDAVMNQFVGDNMEVSIVGDFTEEEVESCVLD-YLGTVYIKDTDE 951
Query: 222 HAC 230
AC
Sbjct: 952 RAC 954
>11_06_0074 - 19821699-19823702
Length = 667
Score = 28.7 bits (61), Expect = 2.9
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +3
Query: 33 NPKEYSEHELEKITRRFTLELAKKGF 110
N + ++EH++EKIT ++ + K GF
Sbjct: 27 NIRSFTEHDIEKITSNYSTLIGKGGF 52
>01_01_0104 + 780442-781273,782514-783424
Length = 580
Score = 28.3 bits (60), Expect = 3.8
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +3
Query: 36 PKEYSEHELEKITRRFTLELAKKGF 110
P YS +++KITRRF +L + GF
Sbjct: 324 PTRYSFSDVKKITRRFKEQLGQGGF 348
>08_01_0089 - 646310-646397,646566-647932
Length = 484
Score = 27.9 bits (59), Expect = 5.0
Identities = 18/58 (31%), Positives = 27/58 (46%)
Frame = +3
Query: 30 INPKEYSEHELEKITRRFTLELAKKGFIGPGVDVPAPDMGTGEREMSWIADXYAKTVG 203
I P+ EHE + L L +I GV +P P G GE + +A +A+ +G
Sbjct: 16 IRPELPPEHETTVHLTPWDLPLLTAEYIQKGVLLPKPPTG-GEHLVKHLASSFARALG 72
>04_03_0690 + 18751601-18753667
Length = 688
Score = 27.9 bits (59), Expect = 5.0
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = -1
Query: 181 SAIQDISRSPVPMSGAGTSTPGPMNP---FLASSRVKRR 74
S D+ SP+P SGAG + P P P F A+ R+ R+
Sbjct: 67 SITADLFPSPLPSSGAGPTPPPPPPPRGAFEAAERLIRQ 105
>01_06_0580 - 30380260-30380747,30380816-30381107
Length = 259
Score = 27.9 bits (59), Expect = 5.0
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -1
Query: 169 DISRSPVPMSGAGTSTPGPMNPFLASSRV 83
D + SP P SG GTS P P SS++
Sbjct: 5 DQNPSPTPASGTGTSVPPPGRATTVSSQL 33
>01_01_0241 +
1992553-1993231,1993820-1993918,1994611-1994649,
1994806-1995857
Length = 622
Score = 27.9 bits (59), Expect = 5.0
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +3
Query: 36 PKEYSEHELEKITRRFTLELAKKGF 110
PK Y+ EL+KITR F +L + G+
Sbjct: 324 PKRYNYSELKKITRSFKDKLGQGGY 348
>02_04_0104 +
19769744-19769893,19770014-19770252,19771000-19771096,
19771213-19771362,19771450-19771576,19772543-19772655,
19772736-19772799,19772898-19772991,19773083-19773191,
19773982-19774080
Length = 413
Score = 27.5 bits (58), Expect = 6.6
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Frame = +3
Query: 45 YSEHELEKITRRFTLELA--KKGFIGPGVDVPAPDMGTGEREMSWIADXYAKTVGFXDIN 218
+S K++ + E A K +I G + P P MG ++W AD + T +
Sbjct: 285 FSRRTPRKVSDIISKEFAGHPKIYIWDGEE-PNPHMG----HLAW-ADAFVVTADSISML 338
Query: 219 AHACVTGKPINXVASTAEFQXRAXAVFH 302
+ AC TGKP+ + + E+ + FH
Sbjct: 339 SEACSTGKPVYVIGT--EYCKWKFSAFH 364
>01_01_0154 -
1355601-1356102,1356197-1356389,1356465-1356520,
1356997-1357066,1357188-1357314,1357418-1357695,
1357908-1358065,1358166-1358246,1358339-1358410,
1358531-1358602,1358729-1358867,1358987-1360045,
1360170-1360257
Length = 964
Score = 27.1 bits (57), Expect = 8.8
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +3
Query: 9 GAKXGIKINPKEYSEHELEKITRRFTLELAKKGF 110
G +++ + ++ ELEKIT +F L + GF
Sbjct: 583 GDNVSLRLENRRFTYKELEKITNKFKRVLGRGGF 616
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.130 0.424
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,596,427
Number of Sequences: 37544
Number of extensions: 206985
Number of successful extensions: 583
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 579
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1095026320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -