Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0969
(511 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_42530| Best HMM Match : ELFV_dehydrog_N (HMM E-Value=0) 135 2e-32
SB_43845| Best HMM Match : ELFV_dehydrog (HMM E-Value=0) 48 3e-06
SB_29491| Best HMM Match : ELFV_dehydrog (HMM E-Value=0) 48 3e-06
SB_52096| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 1e-05
SB_56768| Best HMM Match : VWA (HMM E-Value=0.0042) 30 1.3
SB_45897| Best HMM Match : Peptidase_C50 (HMM E-Value=2.7e-08) 29 2.2
SB_58675| Best HMM Match : RVT_1 (HMM E-Value=0) 28 3.9
SB_46243| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.9
SB_17538| Best HMM Match : Iso_dh (HMM E-Value=0) 28 5.1
SB_16650| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.1
>SB_42530| Best HMM Match : ELFV_dehydrog_N (HMM E-Value=0)
Length = 520
Score = 135 bits (327), Expect = 2e-32
Identities = 61/81 (75%), Positives = 72/81 (88%)
Frame = +3
Query: 9 GAKXGIKINPKEYSEHELEKITRRFTLELAKKGFIGPGVDVPAPDMGTGEREMSWIADXY 188
GAK GIKI+P ++S ELEKITRRFT+ELAKK FIGPG+DVPAPDMGTGEREMSW+AD Y
Sbjct: 165 GAKGGIKIDPSQHSVTELEKITRRFTVELAKKHFIGPGLDVPAPDMGTGEREMSWMADSY 224
Query: 189 AKTVGFXDINAHACVTGKPIN 251
T+GF ++NA+ACVTGKPI+
Sbjct: 225 DMTLGFGNMNAYACVTGKPIH 245
>SB_43845| Best HMM Match : ELFV_dehydrog (HMM E-Value=0)
Length = 448
Score = 48.4 bits (110), Expect = 3e-06
Identities = 24/62 (38%), Positives = 34/62 (54%)
Frame = +3
Query: 9 GAKXGIKINPKEYSEHELEKITRRFTLELAKKGFIGPGVDVPAPDMGTGEREMSWIADXY 188
G K G +PK S+HE+ + F EL + IGP DVPA D+G G RE+ ++ Y
Sbjct: 125 GGKGGSDFDPKGKSDHEVMSFCQSFMTELQRH--IGPNTDVPAGDIGVGGREIGFLFGQY 182
Query: 189 AK 194
+
Sbjct: 183 KR 184
>SB_29491| Best HMM Match : ELFV_dehydrog (HMM E-Value=0)
Length = 486
Score = 48.4 bits (110), Expect = 3e-06
Identities = 24/62 (38%), Positives = 34/62 (54%)
Frame = +3
Query: 9 GAKXGIKINPKEYSEHELEKITRRFTLELAKKGFIGPGVDVPAPDMGTGEREMSWIADXY 188
G K G +PK S+HE+ + F EL + IGP DVPA D+G G RE+ ++ Y
Sbjct: 163 GGKGGSDFDPKGKSDHEVMSFCQSFMTELQRH--IGPNTDVPAGDIGVGGREIGFLFGQY 220
Query: 189 AK 194
+
Sbjct: 221 KR 222
>SB_52096| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 997
Score = 46.8 bits (106), Expect = 1e-05
Identities = 22/62 (35%), Positives = 36/62 (58%)
Frame = +3
Query: 9 GAKXGIKINPKEYSEHELEKITRRFTLELAKKGFIGPGVDVPAPDMGTGEREMSWIADXY 188
G K G +PK +++E+ + + F LEL + IGP D+PA D+G G RE+ ++ Y
Sbjct: 452 GGKGGSNFDPKGKTDNEVMRFCQSFMLELQRH--IGPDTDIPAGDIGVGGREIGFLFGQY 509
Query: 189 AK 194
+
Sbjct: 510 KR 511
>SB_56768| Best HMM Match : VWA (HMM E-Value=0.0042)
Length = 815
Score = 29.9 bits (64), Expect = 1.3
Identities = 18/58 (31%), Positives = 25/58 (43%)
Frame = -3
Query: 176 DPRHFSFAGTHVRSGDIHARPNESFFGKFKGETTSDLFQFMLGVFFGIDLDXXLSTSC 3
DP T S DI + S FG + T + FQ M+ ++ GI ST+C
Sbjct: 614 DPLGAGLIVTASHSIDIARGSSLSLFGVVAADLTMEFFQTMVKMYLGIRCKDITSTTC 671
>SB_45897| Best HMM Match : Peptidase_C50 (HMM E-Value=2.7e-08)
Length = 1907
Score = 29.1 bits (62), Expect = 2.2
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +2
Query: 335 MSLIGXTPGWXRKTFIVQGXRXVGLPLAVPXXSRXTCXGGXEHXXSXS 478
+SL G TP + T + G V L LA+P S T G +H + S
Sbjct: 1619 VSLPGITPSYLMVTRLRNGSAPVVLRLALPDDSEGTESSGNDHCEAAS 1666
>SB_58675| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 2353
Score = 28.3 bits (60), Expect = 3.9
Identities = 22/71 (30%), Positives = 32/71 (45%)
Frame = +3
Query: 84 TLELAKKGFIGPGVDVPAPDMGTGEREMSWIADXYAKTVGFXDINAHACVTGKPINXVAS 263
TL+L G+ GP V+VP + GE E I +TV ++ TG P+ +
Sbjct: 699 TLKLESHGYTGPDVEVPFL-VTPGELECPIIGYNVIETVIKDFPGDNSNTTGSPLQDIMK 757
Query: 264 TAEFQXRAXAV 296
A + R AV
Sbjct: 758 GAFPEVRGEAV 768
>SB_46243| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 603
Score = 28.3 bits (60), Expect = 3.9
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +1
Query: 67 RSLVVSPLNLPKKDSLGLAWMSPLLTWVP 153
RSLVV P +P +LG A + LLT +P
Sbjct: 285 RSLVVEPGTVPSYSNLGYALLGRLLTEMP 313
>SB_17538| Best HMM Match : Iso_dh (HMM E-Value=0)
Length = 644
Score = 27.9 bits (59), Expect = 5.1
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +3
Query: 27 KINPKEYSEHELEKITRRFTLELAKK 104
K+ PKE+ E ++EK+ R T +++
Sbjct: 464 KVEPKEFDEDDVEKVVERLTRNASQR 489
>SB_16650| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1264
Score = 27.9 bits (59), Expect = 5.1
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -1
Query: 178 AIQDISRSPVPMSGAGTSTPGPMNPFLASSR 86
++ D+ + P +SG S GP P LAS++
Sbjct: 190 SLADLLQEPSKLSGQNISQAGPQQPLLASNQ 220
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.317 0.130 0.424
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,819,541
Number of Sequences: 59808
Number of extensions: 220052
Number of successful extensions: 510
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 506
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1123894172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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