Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0969
(511 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g18170.1 68418.m02133 glutamate dehydrogenase 1 (GDH1) identi... 79 2e-15
At3g03910.1 68416.m00405 glutamate dehydrogenase, putative simil... 77 7e-15
At5g07440.1 68418.m00851 glutamate dehydrogenase 2 (GDH2) identi... 71 6e-13
At1g51720.1 68414.m05828 glutamate dehydrogenase, putative simil... 44 5e-05
At3g48560.1 68416.m05302 acetolactate synthase, chloroplast / ac... 29 2.4
At5g52530.2 68418.m06518 dentin sialophosphoprotein-related cont... 27 5.5
At5g52530.1 68418.m06517 dentin sialophosphoprotein-related cont... 27 5.5
At5g34838.1 68418.m04072 hypothetical protein contains Pfam doma... 27 5.5
At4g16980.1 68417.m02560 arabinogalactan-protein family similar ... 27 5.5
At5g38260.1 68418.m04612 serine/threonine protein kinase, putati... 27 9.7
At1g50670.1 68414.m05698 OTU-like cysteine protease family prote... 27 9.7
>At5g18170.1 68418.m02133 glutamate dehydrogenase 1 (GDH1) identical
to glutamate dehydrogenase 1 (GDH 1) [Arabidopsis
thaliana] SWISS-PROT:Q43314
Length = 411
Score = 78.6 bits (185), Expect = 2e-15
Identities = 46/106 (43%), Positives = 59/106 (55%)
Frame = +3
Query: 9 GAKXGIKINPKEYSEHELEKITRRFTLELAKKGFIGPGVDVPAPDMGTGEREMSWIADXY 188
GAK GI +P + S ELE++TR FT ++ IG DVPAPDMGTG + M+WI D Y
Sbjct: 100 GAKGGIGCDPSKLSISELERLTRVFTQKI--HDLIGIHTDVPAPDMGTGPQTMAWILDEY 157
Query: 189 AKTVGFXDINAHACVTGKPINXVASTAEFQXRAXAVFHGLENXINE 326
+K G+ + A VTGKPI+ S V G E +NE
Sbjct: 158 SKFHGY----SPAVVTGKPIDLGGSLGRDAATGRGVMFGTEALLNE 199
>At3g03910.1 68416.m00405 glutamate dehydrogenase, putative similar
to glutamate dehydrogenase 1 (GDH 1) [Arabidopsis
thaliana] SWISS-PROT:Q43314
Length = 411
Score = 77.0 bits (181), Expect = 7e-15
Identities = 46/106 (43%), Positives = 58/106 (54%)
Frame = +3
Query: 9 GAKXGIKINPKEYSEHELEKITRRFTLELAKKGFIGPGVDVPAPDMGTGEREMSWIADXY 188
GAK GI +P E S ELE++TR FT ++ IG DVPAPDMGTG + M+WI D Y
Sbjct: 100 GAKGGIGCDPSELSLSELERLTRVFTQKI--HDLIGIHTDVPAPDMGTGPQTMAWILDEY 157
Query: 189 AKTVGFXDINAHACVTGKPINXVASTAEFQXRAXAVFHGLENXINE 326
+K G ++ A VTGKPI+ S V E +NE
Sbjct: 158 SKFHG----HSPAVVTGKPIDLGGSLGRDAATGRGVLFATEALLNE 199
>At5g07440.1 68418.m00851 glutamate dehydrogenase 2 (GDH2) identical
to glutamate dehydrogenase 2 (GDH 2) [Arabidopsis
thaliana] SWISS-PROT:Q38946
Length = 411
Score = 70.5 bits (165), Expect = 6e-13
Identities = 39/81 (48%), Positives = 52/81 (64%)
Frame = +3
Query: 9 GAKXGIKINPKEYSEHELEKITRRFTLELAKKGFIGPGVDVPAPDMGTGEREMSWIADXY 188
GAK GI +P++ S ELE++TR FT ++ IG DVPAPDMGT + M+WI D Y
Sbjct: 100 GAKGGIGCSPRDLSLSELERLTRVFTQKI--HDLIGIHTDVPAPDMGTNAQTMAWILDEY 157
Query: 189 AKTVGFXDINAHACVTGKPIN 251
+K G ++ A VTGKPI+
Sbjct: 158 SKFHG----HSPAVVTGKPID 174
>At1g51720.1 68414.m05828 glutamate dehydrogenase, putative similar
to NADP-specific glutatamate dehydrogenase (NADP-GDH)
SP:P28724 [Giardia lamblia (Giardia intestinalis)]
Length = 637
Score = 44.4 bits (100), Expect = 5e-05
Identities = 20/65 (30%), Positives = 37/65 (56%)
Frame = +3
Query: 9 GAKXGIKINPKEYSEHELEKITRRFTLELAKKGFIGPGVDVPAPDMGTGEREMSWIADXY 188
GA G +PK S++E+ + + F E+ + ++GP D+P+ ++G G REM ++ Y
Sbjct: 311 GASGGSDFDPKGKSDNEIMRFCQSFMNEMYR--YMGPDKDLPSEEVGVGTREMGYLFGQY 368
Query: 189 AKTVG 203
+ G
Sbjct: 369 RRLAG 373
>At3g48560.1 68416.m05302 acetolactate synthase, chloroplast /
acetohydroxy-acid synthase (ALS) nearly identical to
SP|P17597 Acetolactate synthase, chloroplast precursor
(EC 2.2.1.6, formerly EC 4.1.3.18) (Acetohydroxy-acid
synthase) (ALS) {Arabidopsis thaliana}
Length = 670
Score = 28.7 bits (61), Expect = 2.4
Identities = 19/41 (46%), Positives = 25/41 (60%)
Frame = -1
Query: 163 SRSPVPMSGAGTSTPGPMNPFLASSRVKRRVIFSSSCSEYS 41
S+SP+P+S S P +NP +SS +RR I SSS S S
Sbjct: 25 SKSPLPISRF--SLPFSLNPNKSSSSSRRRGIKSSSPSSIS 63
>At5g52530.2 68418.m06518 dentin sialophosphoprotein-related
contains weak similarity to dentin sialophosphoprotein
precursor (Dentin matrix protein-3) (DMP- 3)
(Swiss-Prot:P97399) [Mus musculus]
Length = 828
Score = 27.5 bits (58), Expect = 5.5
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = -1
Query: 163 SRSPVPMSGAGTSTPGPMNPFLASSRVKRRV 71
SRSPV +G S P P F A R+ RV
Sbjct: 662 SRSPVLWNGRNRSPPPPPGGFRADERMTERV 692
>At5g52530.1 68418.m06517 dentin sialophosphoprotein-related
contains weak similarity to dentin sialophosphoprotein
precursor (Dentin matrix protein-3) (DMP- 3)
(Swiss-Prot:P97399) [Mus musculus]
Length = 828
Score = 27.5 bits (58), Expect = 5.5
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = -1
Query: 163 SRSPVPMSGAGTSTPGPMNPFLASSRVKRRV 71
SRSPV +G S P P F A R+ RV
Sbjct: 662 SRSPVLWNGRNRSPPPPPGGFRADERMTERV 692
>At5g34838.1 68418.m04072 hypothetical protein contains Pfam domain,
PF04827: Protein of unknown function (DUF635)
Length = 311
Score = 27.5 bits (58), Expect = 5.5
Identities = 10/21 (47%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Frame = +2
Query: 107 IHWAWRGCPRS*HG-YRRTRN 166
+HW W+ CP + G Y RT N
Sbjct: 106 MHWEWKNCPTAWKGQYTRTLN 126
>At4g16980.1 68417.m02560 arabinogalactan-protein family similar to
arabinogalactan protein [Arabidopsis thaliana]
gi|10880495|gb|AAG24277; contains proline-rich extensin
domains, INTERPRO:IPR002965
Length = 164
Score = 27.5 bits (58), Expect = 5.5
Identities = 12/43 (27%), Positives = 21/43 (48%)
Frame = -1
Query: 217 LMSXKPTVFA*XSAIQDISRSPVPMSGAGTSTPGPMNPFLASS 89
+M P+ + D+ P+P + +PGPM P +A+S
Sbjct: 93 MMPMTPSTSPSPLTVPDMPSPPMPSGMESSPSPGPMPPAMAAS 135
>At5g38260.1 68418.m04612 serine/threonine protein kinase, putative
similar to receptor serine/threonine kinase PR55K
gi|1235680|gb|AAC49208; contains protein kinase domain,
Pfam:PF00069; contains serine/threonine protein kinase
domain, INTERPRO:IPR002290
Length = 638
Score = 26.6 bits (56), Expect = 9.7
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +3
Query: 39 KEYSEHELEKITRRFTLELAKKGF 110
K+YS E+ KIT+ F+ L K GF
Sbjct: 309 KQYSYAEVRKITKLFSHTLGKGGF 332
>At1g50670.1 68414.m05698 OTU-like cysteine protease family protein
contains Pfam profile PF02338: OTU-like cysteine
protease
Length = 208
Score = 26.6 bits (56), Expect = 9.7
Identities = 15/57 (26%), Positives = 23/57 (40%)
Frame = +3
Query: 138 PDMGTGEREMSWIADXYAKTVGFXDINAHACVTGKPINXVASTAEFQXRAXAVFHGL 308
PD G E+S +AD Y + + DI C + T + R ++ GL
Sbjct: 69 PDKWGGAIELSILADYYGREIAAYDIQTSRC------DLYGQTRNYDERVMLIYDGL 119
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.317 0.130 0.424
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,963,939
Number of Sequences: 28952
Number of extensions: 156880
Number of successful extensions: 430
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 425
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 917929344
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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