Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0961
         (569 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00015B4CE0 Cluster: PREDICTED: similar to Srb7p: RNA...   100   2e-20
UniRef50_Q9W5P1 Cluster: Mediator of RNA polymerase II transcrip...    84   2e-15
UniRef50_Q13503 Cluster: Mediator of RNA polymerase II transcrip...    64   3e-09
UniRef50_Q5DD16 Cluster: SJCHGC09264 protein; n=2; Schistosoma j...    57   3e-07
UniRef50_Q6BER6 Cluster: Mediator of RNA polymerase II transcrip...    42   0.013
UniRef50_A3CP76 Cluster: Putative uncharacterized protein; n=2; ...    33   3.6  
UniRef50_Q7Q5X0 Cluster: ENSANGP00000005949; n=2; Culicidae|Rep:...    32   8.2  

>UniRef50_UPI00015B4CE0 Cluster: PREDICTED: similar to Srb7p: RNA
           polymerase II holoenzyme component, putative; n=1;
           Nasonia vitripennis|Rep: PREDICTED: similar to Srb7p:
           RNA polymerase II holoenzyme component, putative -
           Nasonia vitripennis
          Length = 183

 Score =  100 bits (240), Expect = 2e-20
 Identities = 55/111 (49%), Positives = 66/111 (59%)
 Frame = +1

Query: 97  MADRLTQLQDTINQQAENFCNSIGILQQFSLPSKFPGFERXXXXXXXXXXXXEIMRXYSX 276
           MADRLTQLQDTINQQAE FCNS+GILQQ+S PSKFPGF+R            +    ++ 
Sbjct: 1   MADRLTQLQDTINQQAEYFCNSVGILQQYSTPSKFPGFDRISTPQQPNQSQEDYAALFAT 60

Query: 277 XXXXXXXXXXXXSSSLCPVKRVQLSCKVQSLRRLEAENKEAAEQLEEVARK 429
                         SL P +      +V SL RLE EN+EAAEQLE+V R+
Sbjct: 61  LIARCAKDIDTLIDSL-PSEESSQELQVASLSRLEQENQEAAEQLEDVVRQ 110


>UniRef50_Q9W5P1 Cluster: Mediator of RNA polymerase II
           transcription subunit 21; n=7; Coelomata|Rep: Mediator
           of RNA polymerase II transcription subunit 21 -
           Drosophila melanogaster (Fruit fly)
          Length = 142

 Score = 84.2 bits (199), Expect = 2e-15
 Identities = 49/112 (43%), Positives = 63/112 (56%), Gaps = 1/112 (0%)
 Frame = +1

Query: 97  MADRLTQLQDTINQQAENFCNSIGILQQFSLPSKFPGFERXXXXXXXXXXXXE-IMRXYS 273
           MADRLTQLQDT+NQQAE+FCN+IG++QQ SLPSKF  FER            E   + ++
Sbjct: 1   MADRLTQLQDTVNQQAEHFCNAIGVIQQTSLPSKFVNFERIGPQTPIPCPPQEDYAQLFA 60

Query: 274 XXXXXXXXXXXXXSSSLCPVKRVQLSCKVQSLRRLEAENKEAAEQLEEVARK 429
                          SL P +   +  +  SL+RLE EN+  A  LEEV +K
Sbjct: 61  QLIARCAKDIDTLIESL-PNEDSSIELQNSSLKRLEIENQGTARDLEEVVQK 111


>UniRef50_Q13503 Cluster: Mediator of RNA polymerase II
           transcription subunit 21; n=15; Eumetazoa|Rep: Mediator
           of RNA polymerase II transcription subunit 21 - Homo
           sapiens (Human)
          Length = 144

 Score = 63.7 bits (148), Expect = 3e-09
 Identities = 38/108 (35%), Positives = 52/108 (48%)
 Frame = +1

Query: 97  MADRLTQLQDTINQQAENFCNSIGILQQFSLPSKFPGFERXXXXXXXXXXXXEIMRXYSX 276
           MADRLTQLQD +N  A+ FCN+IG+LQQ   P+ F   +             E  + ++ 
Sbjct: 1   MADRLTQLQDAVNSLADQFCNAIGVLQQCGPPASFNNIQTAINKDQPANPTEEYAQLFAA 60

Query: 277 XXXXXXXXXXXXSSSLCPVKRVQLSCKVQSLRRLEAENKEAAEQLEEV 420
                         SL P +    + +  SL +LE EN EAA  LE+V
Sbjct: 61  LIARTAKDIDVLIDSL-PSEESTAALQAASLYKLEEENHEAATCLEDV 107


>UniRef50_Q5DD16 Cluster: SJCHGC09264 protein; n=2; Schistosoma
           japonicum|Rep: SJCHGC09264 protein - Schistosoma
           japonicum (Blood fluke)
          Length = 153

 Score = 56.8 bits (131), Expect = 3e-07
 Identities = 25/38 (65%), Positives = 30/38 (78%)
 Frame = +1

Query: 97  MADRLTQLQDTINQQAENFCNSIGILQQFSLPSKFPGF 210
           MADRLT+LQD IN QAEN CN+IG++QQ + PS F  F
Sbjct: 1   MADRLTELQDAINLQAENLCNAIGVIQQVAQPSFFSDF 38


>UniRef50_Q6BER6 Cluster: Mediator of RNA polymerase II
           transcription subunit 21; n=2; Caenorhabditis|Rep:
           Mediator of RNA polymerase II transcription subunit 21 -
           Caenorhabditis elegans
          Length = 130

 Score = 41.5 bits (93), Expect = 0.013
 Identities = 19/35 (54%), Positives = 25/35 (71%)
 Frame = +1

Query: 97  MADRLTQLQDTINQQAENFCNSIGILQQFSLPSKF 201
           MADR+TQLQD IN+ A    N+IG+LQ  + P +F
Sbjct: 1   MADRMTQLQDMINEMAGLMTNAIGVLQATAPPCEF 35


>UniRef50_A3CP76 Cluster: Putative uncharacterized protein; n=2;
           Streptococcus|Rep: Putative uncharacterized protein -
           Streptococcus sanguinis (strain SK36)
          Length = 273

 Score = 33.5 bits (73), Expect = 3.6
 Identities = 13/46 (28%), Positives = 28/46 (60%)
 Frame = -2

Query: 169 FRCCYKNSQLVGLWYLEAELSDQPLFNSDIYPTNHC*NLILIWIFS 32
           F   YK  +L GLW + + +++  ++NS  + T H  N+++ ++F+
Sbjct: 205 FSTAYKKYRLFGLWCVVSTVANHFIWNSPFFETEHRINIVVGFLFA 250


>UniRef50_Q7Q5X0 Cluster: ENSANGP00000005949; n=2; Culicidae|Rep:
           ENSANGP00000005949 - Anopheles gambiae str. PEST
          Length = 315

 Score = 32.3 bits (70), Expect = 8.2
 Identities = 12/34 (35%), Positives = 23/34 (67%)
 Frame = +1

Query: 334 KRVQLSCKVQSLRRLEAENKEAAEQLEEVARKER 435
           ++ +L CK+QS+++L+ + K   E  EE+A  E+
Sbjct: 30  EKKELQCKIQSMKKLKVDKKRKKEIQEEIANLEQ 63


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 429,250,281
Number of Sequences: 1657284
Number of extensions: 6029915
Number of successful extensions: 12986
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12972
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 38738010471
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)