Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0961
         (569 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.10 |srb7|med21|mediator complex subunit Srb7 |Schizosac...    31   0.16 
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth...    27   2.6  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    27   2.6  
SPAC19G12.02c |pms1||MutL family mismatch-repair protein Pms1|Sc...    25   5.9  

>SPBC1604.10 |srb7|med21|mediator complex subunit Srb7
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 138

 Score = 30.7 bits (66), Expect = 0.16
 Identities = 18/40 (45%), Positives = 22/40 (55%)
 Frame = +1

Query: 97  MADRLTQLQDTINQQAENFCNSIGILQQFSLPSKFPGFER 216
           MA R TQLQDTI++ A  F +SI  L         PG E+
Sbjct: 1   MACRCTQLQDTIDEVATQFYSSIHYLSSHHDFVPLPGQEK 40


>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
           Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1323

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 14/25 (56%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
 Frame = -2

Query: 373 AEGFALCSSVELS-SLGKDSMSVSM 302
           A G  LC S+ +S  +GKDSMS+SM
Sbjct: 774 AIGLELCPSLGISIPVGKDSMSMSM 798


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 15/48 (31%), Positives = 27/48 (56%)
 Frame = -3

Query: 162  AVTKILSLLVYGILKLS*AISHYSIQIFILLTTVKI*SLYGYFLWKVV 19
            A+ +IL    Y +  LS   +  ++ ++ILL+     SL+ +FL +VV
Sbjct: 1944 AIGQILGASSYQLTLLSGESAQSTVSMYILLSIFSFFSLFWWFLSRVV 1991


>SPAC19G12.02c |pms1||MutL family mismatch-repair protein
           Pms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 794

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 20/53 (37%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
 Frame = -2

Query: 439 KXSPCGLPLQVAQQPPCSRPQVAEGFALC--SSVELSSLGKDSMSVSMSLAQR 287
           K SPC   L  A   P     VAEG +L   S      L KDSM  S  L ++
Sbjct: 385 KRSPCKRKLVEATAQPAISTSVAEGASLAQVSKPLPERLQKDSMRRSSPLNEK 437


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,764,299
Number of Sequences: 5004
Number of extensions: 25322
Number of successful extensions: 68
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)