Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0961
         (569 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45)    31   0.88 
SB_23067| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.7  
SB_2813| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.7  
SB_16163| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  
SB_11774| Best HMM Match : M (HMM E-Value=8.5e-09)                     27   8.2  

>SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45)
          Length = 4160

 Score = 30.7 bits (66), Expect = 0.88
 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
 Frame = +1

Query: 331  VKRVQ--LSCKVQSLRRLEAENKEAAEQLEEVARKERXSRXDSXCSE 465
            +K+VQ  L    ++LRR + EN+   EQ+EEV+R+      D+   E
Sbjct: 1038 LKQVQQRLDNTYEALRRTQDENRNLTEQIEEVSREGSTRMKDANSQE 1084


>SB_23067| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 389

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 11/24 (45%), Positives = 19/24 (79%)
 Frame = -1

Query: 194 LGNENCCRIPMLLQKFSACWFMVS 123
           +G+    RIP +LQ+F+AC+F+V+
Sbjct: 118 MGDLTNYRIPGVLQRFAACYFVVA 141


>SB_2813| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1362

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 148 NFCNSIGILQQFSLPSKFPG 207
           +FCN   ++Q  SLPS+F G
Sbjct: 593 SFCNDFDVVQSSSLPSRFSG 612


>SB_16163| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 853

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 352 CKVQSLRRLEAENKEAAEQLEEVARKERXSRXDSXCSE 465
           CK ++++R E E KE   +      KER SR ++  S+
Sbjct: 700 CKKENMKRQEKEEKEKRAKERAEKEKERKSRMENEKSK 737


>SB_11774| Best HMM Match : M (HMM E-Value=8.5e-09)
          Length = 1998

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/21 (52%), Positives = 17/21 (80%)
 Frame = +1

Query: 355 KVQSLRRLEAENKEAAEQLEE 417
           +V++LR++E ENK  A+ LEE
Sbjct: 887 RVEALRKMEQENKTLADVLEE 907


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,295,959
Number of Sequences: 59808
Number of extensions: 186739
Number of successful extensions: 342
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 342
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1349364063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)