Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0961
         (569 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U46837-1|AAA98511.1|  144|Homo sapiens SRB7 protein.                   64   4e-10
CR456999-1|CAG33280.1|  144|Homo sapiens SURB7 protein.                64   4e-10
BC008380-1|AAH08380.1|  144|Homo sapiens SRB7 suppressor of RNA ...    64   4e-10
U52960-1|AAB06944.1|  144|Homo sapiens RNA polymerase II complex...    62   1e-09

>U46837-1|AAA98511.1|  144|Homo sapiens SRB7 protein.
          Length = 144

 Score = 63.7 bits (148), Expect = 4e-10
 Identities = 38/108 (35%), Positives = 52/108 (48%)
 Frame = +1

Query: 97  MADRLTQLQDTINQQAENFCNSIGILQQFSLPSKFPGFERXXXXXXXXXXXXEIMRXYSX 276
           MADRLTQLQD +N  A+ FCN+IG+LQQ   P+ F   +             E  + ++ 
Sbjct: 1   MADRLTQLQDAVNSLADQFCNAIGVLQQCGPPASFNNIQTAINKDQPANPTEEYAQLFAA 60

Query: 277 XXXXXXXXXXXXSSSLCPVKRVQLSCKVQSLRRLEAENKEAAEQLEEV 420
                         SL P +    + +  SL +LE EN EAA  LE+V
Sbjct: 61  LIARTAKDIDVLIDSL-PSEESTAALQAASLYKLEEENHEAATCLEDV 107


>CR456999-1|CAG33280.1|  144|Homo sapiens SURB7 protein.
          Length = 144

 Score = 63.7 bits (148), Expect = 4e-10
 Identities = 38/108 (35%), Positives = 52/108 (48%)
 Frame = +1

Query: 97  MADRLTQLQDTINQQAENFCNSIGILQQFSLPSKFPGFERXXXXXXXXXXXXEIMRXYSX 276
           MADRLTQLQD +N  A+ FCN+IG+LQQ   P+ F   +             E  + ++ 
Sbjct: 1   MADRLTQLQDAVNSLADQFCNAIGVLQQCGPPASFNNIQTAINKDQPANPTEEYAQLFAA 60

Query: 277 XXXXXXXXXXXXSSSLCPVKRVQLSCKVQSLRRLEAENKEAAEQLEEV 420
                         SL P +    + +  SL +LE EN EAA  LE+V
Sbjct: 61  LIARTAKDIDVLIDSL-PSEESTAALQAASLYKLEEENHEAATCLEDV 107


>BC008380-1|AAH08380.1|  144|Homo sapiens SRB7 suppressor of RNA
           polymerase B homolog (yeast) protein.
          Length = 144

 Score = 63.7 bits (148), Expect = 4e-10
 Identities = 38/108 (35%), Positives = 52/108 (48%)
 Frame = +1

Query: 97  MADRLTQLQDTINQQAENFCNSIGILQQFSLPSKFPGFERXXXXXXXXXXXXEIMRXYSX 276
           MADRLTQLQD +N  A+ FCN+IG+LQQ   P+ F   +             E  + ++ 
Sbjct: 1   MADRLTQLQDAVNSLADQFCNAIGVLQQCGPPASFNNIQTAINKDQPANPTEEYAQLFAA 60

Query: 277 XXXXXXXXXXXXSSSLCPVKRVQLSCKVQSLRRLEAENKEAAEQLEEV 420
                         SL P +    + +  SL +LE EN EAA  LE+V
Sbjct: 61  LIARTAKDIDVLIDSL-PSEESTAALQAASLYKLEEENHEAATCLEDV 107


>U52960-1|AAB06944.1|  144|Homo sapiens RNA polymerase II complex
           component SRB7 protein.
          Length = 144

 Score = 62.5 bits (145), Expect = 1e-09
 Identities = 37/108 (34%), Positives = 52/108 (48%)
 Frame = +1

Query: 97  MADRLTQLQDTINQQAENFCNSIGILQQFSLPSKFPGFERXXXXXXXXXXXXEIMRXYSX 276
           MADRLTQLQD +N  A+ FCN+IG+LQQ   P+ F   +             E  + ++ 
Sbjct: 1   MADRLTQLQDAVNSLADQFCNAIGVLQQCGPPASFNNIQTAINKDQPANPTEEYAQLFAA 60

Query: 277 XXXXXXXXXXXXSSSLCPVKRVQLSCKVQSLRRLEAENKEAAEQLEEV 420
                         SL P +    + +  SL +LE EN EAA  +E+V
Sbjct: 61  LIARTAKDIDVLIDSL-PSEESTAALQAASLYKLEEENHEAATCVEDV 107


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 63,094,684
Number of Sequences: 237096
Number of extensions: 918844
Number of successful extensions: 5565
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5560
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5816287018
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)