Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0961
         (569 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY071027-1|AAL48649.1|  142|Drosophila melanogaster RE10855p pro...    84   1e-16
AE013599-3447|AAF46888.2|  464|Drosophila melanogaster CG30259-P...    28   7.7  

>AY071027-1|AAL48649.1|  142|Drosophila melanogaster RE10855p
           protein.
          Length = 142

 Score = 84.2 bits (199), Expect = 1e-16
 Identities = 49/112 (43%), Positives = 63/112 (56%), Gaps = 1/112 (0%)
 Frame = +1

Query: 97  MADRLTQLQDTINQQAENFCNSIGILQQFSLPSKFPGFERXXXXXXXXXXXXE-IMRXYS 273
           MADRLTQLQDT+NQQAE+FCN+IG++QQ SLPSKF  FER            E   + ++
Sbjct: 1   MADRLTQLQDTVNQQAEHFCNAIGVIQQTSLPSKFVNFERIGPQTPIPCPPQEDYAQLFA 60

Query: 274 XXXXXXXXXXXXXSSSLCPVKRVQLSCKVQSLRRLEAENKEAAEQLEEVARK 429
                          SL P +   +  +  SL+RLE EN+  A  LEEV +K
Sbjct: 61  QLIARCAKDIDTLIESL-PNEDSSIELQNSSLKRLEIENQGTARDLEEVVQK 111


>AE013599-3447|AAF46888.2|  464|Drosophila melanogaster CG30259-PA
           protein.
          Length = 464

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +1

Query: 340 VQLSCKVQSLRRLEAENKEAAEQLEE 417
           V ++C  Q  RRLEAEN +   QL++
Sbjct: 344 VDVACLKQQKRRLEAENSQLKTQLQD 369


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,457,899
Number of Sequences: 53049
Number of extensions: 284833
Number of successful extensions: 661
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2234671092
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)