Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0961
         (569 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81475-5|CAH04698.1|  130|Caenorhabditis elegans Hypothetical pr...    42   4e-04
Z83107-10|CAB05505.1| 1963|Caenorhabditis elegans Hypothetical p...    27   7.2  
Z81499-3|CAB04089.1| 1963|Caenorhabditis elegans Hypothetical pr...    27   7.2  
J01050-1|AAA28124.1| 1966|Caenorhabditis elegans myosin heavy ch...    27   7.2  

>Z81475-5|CAH04698.1|  130|Caenorhabditis elegans Hypothetical
           protein C24H11.9 protein.
          Length = 130

 Score = 41.5 bits (93), Expect = 4e-04
 Identities = 19/35 (54%), Positives = 25/35 (71%)
 Frame = +1

Query: 97  MADRLTQLQDTINQQAENFCNSIGILQQFSLPSKF 201
           MADR+TQLQD IN+ A    N+IG+LQ  + P +F
Sbjct: 1   MADRMTQLQDMINEMAGLMTNAIGVLQATAPPCEF 35


>Z83107-10|CAB05505.1| 1963|Caenorhabditis elegans Hypothetical
           protein F11C3.3 protein.
          Length = 1963

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = +1

Query: 337 RVQLSCKVQSLRRLEAENKEAAEQLEEV 420
           + QLS   + L +LEA+ K+A++QL E+
Sbjct: 904 KTQLSDAEERLAKLEAQQKDASKQLSEL 931


>Z81499-3|CAB04089.1| 1963|Caenorhabditis elegans Hypothetical
           protein F11C3.3 protein.
          Length = 1963

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = +1

Query: 337 RVQLSCKVQSLRRLEAENKEAAEQLEEV 420
           + QLS   + L +LEA+ K+A++QL E+
Sbjct: 904 KTQLSDAEERLAKLEAQQKDASKQLSEL 931


>J01050-1|AAA28124.1| 1966|Caenorhabditis elegans myosin heavy chain
           protein.
          Length = 1966

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = +1

Query: 337 RVQLSCKVQSLRRLEAENKEAAEQLEEV 420
           + QLS   + L +LEA+ K+A++QL E+
Sbjct: 907 KTQLSDAEERLAKLEAQQKDASKQLSEL 934


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,859,476
Number of Sequences: 27780
Number of extensions: 144944
Number of successful extensions: 398
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 396
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)