Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0961
         (569 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g71240.1 68414.m08222 expressed protein contains Pfam profile...    28   5.0  
At1g42440.1 68414.m04894 expressed protein contains Pfam domain,...    27   6.7  

>At1g71240.1 68414.m08222 expressed protein contains Pfam profile:
           PF04842 plant protein of unknown function (DUF639)
          Length = 824

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = +1

Query: 346 LSCKVQSLRRLEAENKEAAEQLEEVARKERXSRXDS 453
           L  K QSL++++ E+++  E LEE+   E+  R D+
Sbjct: 89  LKKKSQSLKKIDLEDQQDFEDLEELLTVEQTVRSDT 124


>At1g42440.1 68414.m04894 expressed protein contains Pfam domain,
           PF04950: Protein of unknown function (DUF663)
          Length = 793

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = -2

Query: 388 SRPQVAEGFALCSSVELSSLGKDSMSVSMS 299
           S P+V   F L +SVEL+SLG+D + +  S
Sbjct: 77  SAPRVIVLFPLSASVELNSLGEDVLKLLSS 106


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,367,152
Number of Sequences: 28952
Number of extensions: 135339
Number of successful extensions: 311
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 311
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1102220672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)