Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0958
(403 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC890.08 |rpl31||60S ribosomal protein L31|Schizosaccharomyces... 109 2e-25
SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc... 27 0.82
SPBC1198.14c |fbp1|SPBC660.04c|fructose-1,6-bisphosphatase Fbp1 ... 27 0.82
SPAC1F8.03c |str3||siderophore-iron transporter Str3 |Schizosacc... 27 1.1
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ... 26 2.5
SPBC36B7.04 |||tRNA dihydrouridine synthase Dus1 |Schizosaccharo... 25 4.4
SPBC839.12 |rpc31||DNA-directed RNA polymerase III complex subun... 25 5.8
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp... 25 5.8
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz... 24 7.7
>SPAC890.08 |rpl31||60S ribosomal protein L31|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 113
Score = 109 bits (261), Expect = 2e-25
Identities = 48/72 (66%), Positives = 61/72 (84%)
Frame = +1
Query: 40 KSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNKFLW 219
KSAIN+VVTR+YT+++HKRL+GV FKKRAPRAIKEI FA+K M T ++RVD LNK +W
Sbjct: 6 KSAINQVVTRDYTIHMHKRLYGVSFKKRAPRAIKEIVAFAQKHMQTKEVRVDPSLNKEVW 65
Query: 220 SKGVRNVPFRVR 255
+G+RNVP R+R
Sbjct: 66 KRGIRNVPHRLR 77
Score = 28.3 bits (60), Expect = 0.47
Identities = 15/30 (50%), Positives = 22/30 (73%)
Frame = +3
Query: 255 VRLSRRRNDDEDSAHKLFTLVTYVPVASIK 344
+RLSR+R+D++D A L+T V V VA+ K
Sbjct: 78 LRLSRKRSDEDDKA--LYTYVQAVDVANPK 105
>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 898
Score = 27.5 bits (58), Expect = 0.82
Identities = 19/62 (30%), Positives = 28/62 (45%)
Frame = -3
Query: 188 RMSGVPICFSANFRISLIALGARFLNPTP*SRLCKLTVYSRVTTSFMADLPFLSPLGLAI 9
R+ +P+ F R+ +G L PT R+ K Y TS M L +S LGL +
Sbjct: 45 RLIHIPLSFLQQPRVIAEIIGGIVLGPTVMGRIPKFLDYI-FPTSSMGPLNLVSNLGLVL 103
Query: 8 VI 3
+
Sbjct: 104 FL 105
>SPBC1198.14c |fbp1|SPBC660.04c|fructose-1,6-bisphosphatase Fbp1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 347
Score = 27.5 bits (58), Expect = 0.82
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = -2
Query: 264 KASPDTEGNISDSLRP-KEFV*ASVYSNVRSSHLFFS 157
K P ++G+ISD LRP KE V A S+HL +
Sbjct: 155 KLRPGSQGDISDVLRPGKEMVAAGYTMYGASAHLLLT 191
>SPAC1F8.03c |str3||siderophore-iron transporter Str3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 630
Score = 27.1 bits (57), Expect = 1.1
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -2
Query: 213 EFV*ASVYSNVRSSHLFFSELSDFFDCSWGTLFKSNTMKSF 91
E V S+Y N R +L ++ CSW + +S+T S+
Sbjct: 68 EAVRDSIYQNKRGMYLAYAFGIAILACSWASAIQSSTTYSY 108
>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 673
Score = 25.8 bits (54), Expect = 2.5
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -1
Query: 388 GVYSWLASTFSVCKPLID 335
GV WLAST+S C +++
Sbjct: 464 GVVCWLASTYSFCDGIVN 481
>SPBC36B7.04 |||tRNA dihydrouridine synthase Dus1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 399
Score = 25.0 bits (52), Expect = 4.4
Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Frame = -3
Query: 248 RKGTFLTPL-DQRNLFKRVSTRMSGVPICFSANFRISLIALGARFLN 111
R L P+ DQ L R+ R SG +C+S F L + N
Sbjct: 17 RPKRILAPMVDQSELPWRILARRSGADLCYSPMFHSRLFGESEDYRN 63
>SPBC839.12 |rpc31||DNA-directed RNA polymerase III complex subunit
Rpc31|Schizosaccharomyces pombe|chr 2|||Manual
Length = 210
Score = 24.6 bits (51), Expect = 5.8
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -2
Query: 264 KASPDTEGNISDSLRPKEFV*ASVYSNVRSSHL 166
K PD + + S+RP+E + Y +R+S L
Sbjct: 30 KLYPDRDIPLQRSIRPEELLELRFYKEIRTSFL 62
>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
Spt6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1365
Score = 24.6 bits (51), Expect = 5.8
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 49 INEVVTREYTVNLHKRLHGVGFKKRAPRAIKEI 147
INE VT +Y N+ + G+G ++A +K+I
Sbjct: 860 INEAVTNKYEANILPYIAGLG-PRKADYVLKKI 891
>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
Chs2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 926
Score = 24.2 bits (50), Expect = 7.7
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +3
Query: 186 SSRHSLKQIPLV*GSQKCSLPCPVRL 263
SS H K +PL+ GS P P+ L
Sbjct: 174 SSSHYSKDVPLLCGSLTIDCPTPIDL 199
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,656,188
Number of Sequences: 5004
Number of extensions: 31174
Number of successful extensions: 69
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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