Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0958
(403 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_02_0140 + 12255418-12255512,12257514-12257793 117 4e-27
08_02_1181 - 24985963-24986242,24987109-24987197 113 4e-26
02_05_0532 - 29814199-29814478,29814922-29814969,29815558-29815649 96 1e-20
01_06_0668 + 31058497-31059510,31059609-31059676,31060189-310602... 27 5.6
01_01_1216 - 9827190-9827531 27 5.6
07_03_0256 - 15875066-15877025,15877292-15877911 26 9.7
05_04_0103 - 18017826-18018182,18018268-18018342,18018581-180186... 26 9.7
04_04_0395 - 24911449-24911719,24912048-24912400,24912486-249125... 26 9.7
04_01_0359 + 4711289-4713052,4713423-4713950 26 9.7
01_03_0147 - 13125065-13126679,13126802-13127664 26 9.7
>06_02_0140 + 12255418-12255512,12257514-12257793
Length = 124
Score = 117 bits (281), Expect = 4e-27
Identities = 53/78 (67%), Positives = 64/78 (82%)
Frame = +1
Query: 22 KGERKGKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTR 201
K +R G + +EVVTREYT+NLHKRLHG FKK+AP AIKEIRKFA+K MGT D+RVD +
Sbjct: 4 KKQRPGGARKDEVVTREYTINLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTIDVRVDVK 63
Query: 202 LNKFLWSKGVRNVPFRVR 255
LNK +WS G+R+VP RVR
Sbjct: 64 LNKHIWSSGIRSVPRRVR 81
Score = 41.1 bits (92), Expect = 3e-04
Identities = 20/40 (50%), Positives = 30/40 (75%), Gaps = 2/40 (5%)
Frame = +3
Query: 255 VRLSRRRNDDEDSAHKLFTLVTY--VPVASIKGLQTENVD 368
VR++RRRND+ED+ +L++LVT VP +KGL T+ V+
Sbjct: 82 VRIARRRNDEEDAKEELYSLVTVAEVPQEGLKGLGTKLVE 121
>08_02_1181 - 24985963-24986242,24987109-24987197
Length = 122
Score = 113 bits (273), Expect = 4e-26
Identities = 53/77 (68%), Positives = 63/77 (81%), Gaps = 1/77 (1%)
Frame = +1
Query: 28 ERKGKSAINE-VVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRL 204
E+KG +A E VVTREYT+NLHKRLH FKK+AP AIKEIRKFA+K MGT D+RVD +L
Sbjct: 3 EKKGGAARKEEVVTREYTINLHKRLHSCTFKKKAPNAIKEIRKFAQKAMGTTDVRVDVKL 62
Query: 205 NKFLWSKGVRNVPFRVR 255
NK +WS G+R+VP RVR
Sbjct: 63 NKHIWSSGIRSVPRRVR 79
Score = 41.5 bits (93), Expect = 2e-04
Identities = 20/40 (50%), Positives = 30/40 (75%), Gaps = 2/40 (5%)
Frame = +3
Query: 255 VRLSRRRNDDEDSAHKLFTLVTY--VPVASIKGLQTENVD 368
VR++R+RND+ED+ +L++LVT VP +KGL T+ VD
Sbjct: 80 VRIARKRNDEEDAKEELYSLVTVAEVPPEGLKGLGTKVVD 119
>02_05_0532 - 29814199-29814478,29814922-29814969,29815558-29815649
Length = 139
Score = 95.9 bits (228), Expect = 1e-20
Identities = 49/84 (58%), Positives = 59/84 (70%), Gaps = 16/84 (19%)
Frame = +1
Query: 52 NEVVTREYTVNLHKRLHGV----------------GFKKRAPRAIKEIRKFAEKQMGTPD 183
+EVVTREYT+NLHKRLHG FKK+AP AIKEIRKFA+K MGT D
Sbjct: 13 DEVVTREYTINLHKRLHGCIVCSNDLIHYAPDIVSTFKKKAPNAIKEIRKFAQKAMGTTD 72
Query: 184 IRVDTRLNKFLWSKGVRNVPFRVR 255
IR+D +LNK +W+ G+R+VP RVR
Sbjct: 73 IRIDVKLNKAIWTNGIRSVPRRVR 96
Score = 41.5 bits (93), Expect = 2e-04
Identities = 19/40 (47%), Positives = 30/40 (75%), Gaps = 2/40 (5%)
Frame = +3
Query: 255 VRLSRRRNDDEDSAHKLFTLVTY--VPVASIKGLQTENVD 368
VR+SR+RND+ED+ +L++LVT +P +KGL T+ V+
Sbjct: 97 VRISRKRNDEEDAKEELYSLVTVAEIPAEGLKGLGTKVVE 136
>01_06_0668 +
31058497-31059510,31059609-31059676,31060189-31060270,
31060339-31060431,31060516-31060668,31060900-31060968,
31061091-31061184,31061594-31061677,31062133-31062221,
31062340-31062456,31062567-31062707,31062823-31063005
Length = 728
Score = 27.1 bits (57), Expect = 5.6
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +1
Query: 79 VNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPD 183
+N+ ++G GF A + E+ K A KQ+ PD
Sbjct: 441 LNVDSAVYGAGFYASATPQLDELLKEASKQVQNPD 475
>01_01_1216 - 9827190-9827531
Length = 113
Score = 27.1 bits (57), Expect = 5.6
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +1
Query: 115 KKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNKFLWSKGVRNVPFR 249
KK+ + K+ +K + +P I +DTR+ K + NV FR
Sbjct: 45 KKKKKKKKKKKKKKKHMKNASPCISMDTRIKKLAMRPIIGNVSFR 89
>07_03_0256 - 15875066-15877025,15877292-15877911
Length = 859
Score = 26.2 bits (55), Expect = 9.7
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = -2
Query: 267 VKASPDTEGNISDSLRPKEFV*ASVYSNVRSSHLFFSELSDFFDCS 130
+K DT+G IS LR V ++ + E+ + FDCS
Sbjct: 114 IKWLMDTQGGISQRLRTMAIVGCGGLGKTTLANQVYLEVKNQFDCS 159
>05_04_0103 -
18017826-18018182,18018268-18018342,18018581-18018673,
18018770-18019013,18019219-18019346
Length = 298
Score = 26.2 bits (55), Expect = 9.7
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +3
Query: 270 RRNDDEDSAHKLFTLVTYVPVASIKGLQTENVDASQE 380
R NDD++ AHK + +Y KG + E V A E
Sbjct: 101 RGNDDDEKAHKAYH-KSYFEGVPFKGWRNETVVARSE 136
>04_04_0395 -
24911449-24911719,24912048-24912400,24912486-24912560,
24912799-24912891,24912988-24913231,24913437-24913564
Length = 387
Score = 26.2 bits (55), Expect = 9.7
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +3
Query: 270 RRNDDEDSAHKLFTLVTYVPVASIKGLQTENVDASQE 380
R NDD++ AHK + +Y KG + E V A E
Sbjct: 101 RGNDDDEKAHKAYH-KSYFEGVPFKGWRNETVVARSE 136
>04_01_0359 + 4711289-4713052,4713423-4713950
Length = 763
Score = 26.2 bits (55), Expect = 9.7
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = -2
Query: 240 NISDSLRPKEFV*ASVYSNVRSSHLFFSELSDFFDCSW 127
NI R +F+ A Y ++ L+F+ SD F W
Sbjct: 48 NILQCQRVSDFLIAMAYFSIPLELLYFATCSDLFPLKW 85
>01_03_0147 - 13125065-13126679,13126802-13127664
Length = 825
Score = 26.2 bits (55), Expect = 9.7
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -3
Query: 239 TFLTPLDQRNLFKRVSTRMSGVPICFS 159
++LT L RNL + + R +G P C++
Sbjct: 481 SYLTDLISRNLIQALHLRHNGTPSCYT 507
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,256,939
Number of Sequences: 37544
Number of extensions: 186477
Number of successful extensions: 390
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 390
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 694697784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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