Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0958
         (403 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50019| Best HMM Match : No HMM Matches (HMM E-Value=.)              58   2e-09
SB_42441| Best HMM Match : DUF1484 (HMM E-Value=0.48)                  48   4e-06
SB_39444| Best HMM Match : SAC3_GANP (HMM E-Value=0.68)                29   1.9  
SB_33029| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     28   3.3  
SB_37851| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.7  
SB_14516| Best HMM Match : PH (HMM E-Value=6.8e-06)                    27   7.6  
SB_21275| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   10.0 
SB_50834| Best HMM Match : GCR (HMM E-Value=2.5)                       26   10.0 

>SB_50019| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 849

 Score = 58.4 bits (135), Expect = 2e-09
 Identities = 25/41 (60%), Positives = 35/41 (85%)
 Frame = +3

Query: 255 VRLSRRRNDDEDSAHKLFTLVTYVPVASIKGLQTENVDASQ 377
           VRL+R+RN+DEDS HKL+TLVT V V++ KGLQT+ V++ +
Sbjct: 809 VRLARKRNEDEDSPHKLYTLVTSVAVSTFKGLQTQKVESEE 849



 Score = 56.4 bits (130), Expect = 8e-09
 Identities = 24/38 (63%), Positives = 30/38 (78%)
 Frame = +1

Query: 10  MAKPKGERKGKSAINEVVTREYTVNLHKRLHGVGFKKR 123
           M K   ++KG+SAINEVVTREYT+NLHKR+HG+    R
Sbjct: 769 MVKKTDKKKGRSAINEVVTREYTINLHKRIHGMNVPYR 806


>SB_42441| Best HMM Match : DUF1484 (HMM E-Value=0.48)
          Length = 776

 Score = 47.6 bits (108), Expect = 4e-06
 Identities = 22/35 (62%), Positives = 28/35 (80%)
 Frame = +3

Query: 255 VRLSRRRNDDEDSAHKLFTLVTYVPVASIKGLQTE 359
           VRL+R+RN+DEDS HKL+TLVT V V++ K L  E
Sbjct: 9   VRLARKRNEDEDSPHKLYTLVTSVAVSTFKVLADE 43


>SB_39444| Best HMM Match : SAC3_GANP (HMM E-Value=0.68)
          Length = 794

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = +3

Query: 246 PCPVRLSRRRNDDEDSAHKLFTLVTYVPVASIKGLQT 356
           P P+ L   R  DED  H L  +    PV S+K   T
Sbjct: 208 PSPIELKHSRKPDEDLKHSLKPVEPAKPVMSLKADDT 244


>SB_33029| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 927

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -3

Query: 230 TPLDQRNLFKRVSTRMSGVPICFSANF 150
           TP D  N   R  T M G+P+C +A F
Sbjct: 285 TPEDTPNDSLRTKTVMFGIPVCMTARF 311


>SB_37851| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 269

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +1

Query: 34  KGKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRK 153
           K K  INEV+T  Y     + L      KR  R IKE+ +
Sbjct: 213 KNKPEINEVITPRYPPGEGEVLDDASIIKRYKRQIKELEE 252


>SB_14516| Best HMM Match : PH (HMM E-Value=6.8e-06)
          Length = 438

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 20/69 (28%), Positives = 29/69 (42%)
 Frame = -3

Query: 215 RNLFKRVSTRMSGVPICFSANFRISLIALGARFLNPTP*SRLCKLTVYSRVTTSFMADLP 36
           RNL KRV  R    P C   + R +     +  L      R CK +V S  +T+  +   
Sbjct: 214 RNLAKRVHERFGDAPGCEFRHRRRNSGVGTSEILTDCSGERSCKRSVTSNRSTNSSSKER 273

Query: 35  FLSPLGLAI 9
           ++ PL   I
Sbjct: 274 WMGPLASCI 282


>SB_21275| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 327

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
 Frame = +1

Query: 4   ITMAKPKGERKGKSAINEVVTREYTVNLHKRLHGV-GFKKRAPRAIKEIRKFAE--KQMG 174
           + + K K  R+     NE + REY   LHK L  +  F    PR     R   +  KQ+G
Sbjct: 93  LVIEKDKSLRRKIEEENEQLKREYLQQLHKTLEALRTFDFNNPRDAIFKRNLVKMHKQVG 152

Query: 175 TPDIRVDTRLN 207
              +RV   +N
Sbjct: 153 NYCLRVYGEMN 163


>SB_50834| Best HMM Match : GCR (HMM E-Value=2.5)
          Length = 909

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 16  KPKGERKGKSAINEVVTREYTVNLHK 93
           KPKG+ +G    NEV +++ TV + K
Sbjct: 299 KPKGQPQGSRPSNEVQSKDSTVMISK 324


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,224,617
Number of Sequences: 59808
Number of extensions: 236009
Number of successful extensions: 436
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 436
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 715479706
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)