Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0958
(403 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82077-3|CAB63331.1| 122|Caenorhabditis elegans Hypothetical pr... 126 4e-30
Z82077-4|CAB63332.1| 70|Caenorhabditis elegans Hypothetical pr... 58 3e-09
U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein. 27 5.0
AY724774-1|AAU21474.1| 750|Caenorhabditis elegans UNC-89-B prot... 27 5.0
AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated... 27 5.0
AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated... 27 5.0
AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated... 27 5.0
AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated... 27 5.0
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated... 27 5.0
Z82274-12|CAJ76931.1| 304|Caenorhabditis elegans Hypothetical p... 26 8.8
Z82274-11|CAB54268.2| 315|Caenorhabditis elegans Hypothetical p... 26 8.8
AL110490-3|CAB54449.1| 892|Caenorhabditis elegans Hypothetical ... 26 8.8
AF324487-1|AAK49908.1| 315|Caenorhabditis elegans JC8.12-like p... 26 8.8
AC024860-2|AAN84888.1| 173|Caenorhabditis elegans Hypothetical ... 26 8.8
>Z82077-3|CAB63331.1| 122|Caenorhabditis elegans Hypothetical
protein W09C5.6a protein.
Length = 122
Score = 126 bits (305), Expect = 4e-30
Identities = 54/79 (68%), Positives = 69/79 (87%)
Frame = +1
Query: 19 PKGERKGKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDT 198
PK E+K +S INEVVTREYT+++H R+ G+G KKRAPRAI EI+KFA+ QM T D+RVDT
Sbjct: 3 PKNEKKSRSTINEVVTREYTIHIHARIRGIGSKKRAPRAIDEIKKFAKIQMKTNDVRVDT 62
Query: 199 RLNKFLWSKGVRNVPFRVR 255
+LNKF+WSKG++NVP+RVR
Sbjct: 63 KLNKFIWSKGIKNVPYRVR 81
Score = 57.6 bits (133), Expect = 3e-09
Identities = 26/41 (63%), Positives = 31/41 (75%)
Frame = +3
Query: 255 VRLSRRRNDDEDSAHKLFTLVTYVPVASIKGLQTENVDASQ 377
VRLSRRRN+DEDSA KL+TL TYVP + GL NVD+ +
Sbjct: 82 VRLSRRRNEDEDSAQKLYTLCTYVPCTNFHGLTNVNVDSEE 122
>Z82077-4|CAB63332.1| 70|Caenorhabditis elegans Hypothetical
protein W09C5.6b protein.
Length = 70
Score = 57.6 bits (133), Expect = 3e-09
Identities = 26/41 (63%), Positives = 31/41 (75%)
Frame = +3
Query: 255 VRLSRRRNDDEDSAHKLFTLVTYVPVASIKGLQTENVDASQ 377
VRLSRRRN+DEDSA KL+TL TYVP + GL NVD+ +
Sbjct: 30 VRLSRRRNEDEDSAQKLYTLCTYVPCTNFHGLTNVNVDSEE 70
Score = 54.4 bits (125), Expect = 3e-08
Identities = 21/29 (72%), Positives = 27/29 (93%)
Frame = +1
Query: 169 MGTPDIRVDTRLNKFLWSKGVRNVPFRVR 255
M T D+RVDT+LNKF+WSKG++NVP+RVR
Sbjct: 1 MKTNDVRVDTKLNKFIWSKGIKNVPYRVR 29
>U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.
Length = 6632
Score = 27.1 bits (57), Expect = 5.0
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = -2
Query: 282 HHYVFVKASPDTEGNIS 232
HH V V ASPD EG S
Sbjct: 6097 HHLVIVNASPDDEGEYS 6113
>AY724774-1|AAU21474.1| 750|Caenorhabditis elegans UNC-89-B
protein.
Length = 750
Score = 27.1 bits (57), Expect = 5.0
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = -2
Query: 282 HHYVFVKASPDTEGNIS 232
HH V V ASPD EG S
Sbjct: 176 HHLVIVNASPDDEGEYS 192
>AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated
protein 89, isoform e protein.
Length = 5992
Score = 27.1 bits (57), Expect = 5.0
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = -2
Query: 282 HHYVFVKASPDTEGNIS 232
HH V V ASPD EG S
Sbjct: 5457 HHLVIVNASPDDEGEYS 5473
>AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated
protein 89, isoform a protein.
Length = 6632
Score = 27.1 bits (57), Expect = 5.0
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = -2
Query: 282 HHYVFVKASPDTEGNIS 232
HH V V ASPD EG S
Sbjct: 6097 HHLVIVNASPDDEGEYS 6113
>AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated
protein 89, isoform g protein.
Length = 7122
Score = 27.1 bits (57), Expect = 5.0
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = -2
Query: 282 HHYVFVKASPDTEGNIS 232
HH V V ASPD EG S
Sbjct: 6097 HHLVIVNASPDDEGEYS 6113
>AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated
protein 89, isoform f protein.
Length = 7441
Score = 27.1 bits (57), Expect = 5.0
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = -2
Query: 282 HHYVFVKASPDTEGNIS 232
HH V V ASPD EG S
Sbjct: 5457 HHLVIVNASPDDEGEYS 5473
>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
protein 89, isoform b protein.
Length = 8081
Score = 27.1 bits (57), Expect = 5.0
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = -2
Query: 282 HHYVFVKASPDTEGNIS 232
HH V V ASPD EG S
Sbjct: 6097 HHLVIVNASPDDEGEYS 6113
>Z82274-12|CAJ76931.1| 304|Caenorhabditis elegans Hypothetical
protein JC8.12b protein.
Length = 304
Score = 26.2 bits (55), Expect = 8.8
Identities = 10/31 (32%), Positives = 20/31 (64%)
Frame = +3
Query: 303 LFTLVTYVPVASIKGLQTENVDASQE*TPLV 395
L+T+ ++ VAS +G+ N D+ + TP++
Sbjct: 70 LYTISQWITVASFEGIAMPNFDSVKRLTPIL 100
>Z82274-11|CAB54268.2| 315|Caenorhabditis elegans Hypothetical
protein JC8.12a protein.
Length = 315
Score = 26.2 bits (55), Expect = 8.8
Identities = 10/31 (32%), Positives = 20/31 (64%)
Frame = +3
Query: 303 LFTLVTYVPVASIKGLQTENVDASQE*TPLV 395
L+T+ ++ VAS +G+ N D+ + TP++
Sbjct: 81 LYTISQWITVASFEGIAMPNFDSVKRLTPIL 111
>AL110490-3|CAB54449.1| 892|Caenorhabditis elegans Hypothetical
protein Y48B6A.3 protein.
Length = 892
Score = 26.2 bits (55), Expect = 8.8
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Frame = +1
Query: 19 PKGERKGKSAINEVVTREYTVNLHKRLHGVGFKKRAPRA---IKEIRKF-AEKQMGTPDI 186
PK E + + I E + R Y++ +RL + APRA + R+F A K+M +
Sbjct: 71 PKNEDEMFALIFEYIDRIYSIVRPRRLLYMAIDGVAPRAKMNQQRSRRFRASKEMAEKEA 130
Query: 187 RVDTRLNKFLWSKGVRNVP 243
++ + N+ L ++G+ P
Sbjct: 131 SIEEQRNR-LMAEGIAVPP 148
>AF324487-1|AAK49908.1| 315|Caenorhabditis elegans JC8.12-like
protein protein.
Length = 315
Score = 26.2 bits (55), Expect = 8.8
Identities = 10/31 (32%), Positives = 20/31 (64%)
Frame = +3
Query: 303 LFTLVTYVPVASIKGLQTENVDASQE*TPLV 395
L+T+ ++ VAS +G+ N D+ + TP++
Sbjct: 81 LYTISQWITVASFEGIAMPNFDSVKRLTPIL 111
>AC024860-2|AAN84888.1| 173|Caenorhabditis elegans Hypothetical
protein Y71H2AR.3 protein.
Length = 173
Score = 26.2 bits (55), Expect = 8.8
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +1
Query: 100 HGVGFKKRAPRAIKEIRKFAEKQMGTPDIRV 192
+ V K + P+ I++IRKF + + +PD V
Sbjct: 126 YNVDSKIKQPQVIEDIRKFVKIHVDSPDSEV 156
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,089,244
Number of Sequences: 27780
Number of extensions: 175287
Number of successful extensions: 433
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 433
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 630384202
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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