Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0958
         (403 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   5.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   5.3  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        21   6.9  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    20   9.2  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    20   9.2  

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -2

Query: 291 NLHHHYVFVKASP 253
           +LHHH V  + SP
Sbjct: 75  HLHHHQVLYQQSP 87


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 240  SLPCPVRLSRRRNDDEDS 293
            S P P+ +SR  + DEDS
Sbjct: 1396 SPPTPLSISRAGSRDEDS 1413


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -2

Query: 300 YVRNLHHHYVFVKASPDT 247
           Y +  HH  +F  A+P T
Sbjct: 9   YHQQFHHQQLFSSANPGT 26


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 20.2 bits (40), Expect = 9.2
 Identities = 9/43 (20%), Positives = 20/43 (46%)
 Frame = +3

Query: 129 KSNQRNPKVR*KTDGNSGHSSRHSLKQIPLV*GSQKCSLPCPV 257
           +   R PK+      N+ H++ ++ K    +   ++  +P PV
Sbjct: 306 RERSREPKIISSLSNNTIHNNNYNKKLYYNIINIEQIPVPVPV 348


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 20.2 bits (40), Expect = 9.2
 Identities = 9/29 (31%), Positives = 12/29 (41%)
 Frame = +3

Query: 237 CSLPCPVRLSRRRNDDEDSAHKLFTLVTY 323
           CSLPC V  +++    E      F    Y
Sbjct: 587 CSLPCEVGQAKKYVAGEQCCWHCFNCTQY 615


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,831
Number of Sequences: 438
Number of extensions: 2070
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10008927
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)