Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0958
(403 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g26230.1 68417.m03776 60S ribosomal protein L31 (RPL31B) ribo... 113 3e-26
At5g56710.1 68418.m07078 60S ribosomal protein L31 (RPL31C) 111 2e-25
At2g19740.1 68415.m02306 60S ribosomal protein L31 (RPL31A) 110 3e-25
At4g17250.1 68417.m02594 expressed protein 28 2.0
At3g19400.2 68416.m02460 cysteine proteinase, putative non-conse... 28 2.0
At3g19400.1 68416.m02461 cysteine proteinase, putative non-conse... 28 2.0
At3g51220.1 68416.m05607 expressed protein contains Pfam doamin ... 27 3.5
At5g32590.1 68418.m03867 myosin heavy chain-related similar to M... 27 4.7
At1g32900.1 68414.m04053 starch synthase, putative similar to st... 27 4.7
At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing ... 27 6.2
At3g43960.1 68416.m04706 cysteine proteinase, putative contains ... 26 8.2
>At4g26230.1 68417.m03776 60S ribosomal protein L31 (RPL31B)
ribosomal protein L31, Nicotiana glutinosa, U23784
Length = 119
Score = 113 bits (273), Expect = 3e-26
Identities = 51/76 (67%), Positives = 63/76 (82%)
Frame = +1
Query: 28 ERKGKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLN 207
E+KG+ EVVTREYT+NLH+RLH FKK+AP+AIKEIRKFAEK+MGT D+RVD +LN
Sbjct: 3 EKKGRK--EEVVTREYTINLHRRLHSCTFKKKAPKAIKEIRKFAEKEMGTKDVRVDVKLN 60
Query: 208 KFLWSKGVRNVPFRVR 255
K +WSKG+R P R+R
Sbjct: 61 KQIWSKGIRGPPRRIR 76
Score = 38.7 bits (86), Expect = 0.001
Identities = 17/40 (42%), Positives = 28/40 (70%), Gaps = 2/40 (5%)
Frame = +3
Query: 255 VRLSRRRNDDEDSAHKLFTLVTY--VPVASIKGLQTENVD 368
VR++R+RNDDED+ + F+LVT +P + GL T+ ++
Sbjct: 77 VRVARKRNDDEDAKEEFFSLVTVAEIPAEGLSGLGTKIIE 116
>At5g56710.1 68418.m07078 60S ribosomal protein L31 (RPL31C)
Length = 119
Score = 111 bits (267), Expect = 2e-25
Identities = 50/76 (65%), Positives = 62/76 (81%)
Frame = +1
Query: 28 ERKGKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLN 207
E+KG+ EV+TREYT+NLH+RLH FKK+AP+AIKEIRKFAEK MGT D+RVD +LN
Sbjct: 3 EKKGRK--EEVITREYTINLHRRLHKCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLN 60
Query: 208 KFLWSKGVRNVPFRVR 255
K +WSKG+R P R+R
Sbjct: 61 KQIWSKGIRGPPRRIR 76
Score = 38.7 bits (86), Expect = 0.001
Identities = 17/40 (42%), Positives = 28/40 (70%), Gaps = 2/40 (5%)
Frame = +3
Query: 255 VRLSRRRNDDEDSAHKLFTLVTY--VPVASIKGLQTENVD 368
VR++R+RNDDED+ + F+LVT +P + GL T+ ++
Sbjct: 77 VRVARKRNDDEDAKEEFFSLVTVAEIPAEGLSGLGTKVIE 116
>At2g19740.1 68415.m02306 60S ribosomal protein L31 (RPL31A)
Length = 119
Score = 110 bits (265), Expect = 3e-25
Identities = 50/74 (67%), Positives = 58/74 (78%)
Frame = +1
Query: 34 KGKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNKF 213
KGK EVVTREYT+NLH+RLH FKK+AP AIKEIRKFA K MGT D+RVD +LNK
Sbjct: 3 KGKGRKEEVVTREYTINLHRRLHSCTFKKKAPNAIKEIRKFALKAMGTKDVRVDVKLNKQ 62
Query: 214 LWSKGVRNVPFRVR 255
+WSKG+R P R+R
Sbjct: 63 IWSKGIRGPPRRIR 76
Score = 39.1 bits (87), Expect = 0.001
Identities = 17/43 (39%), Positives = 29/43 (67%), Gaps = 2/43 (4%)
Frame = +3
Query: 255 VRLSRRRNDDEDSAHKLFTLVTY--VPVASIKGLQTENVDASQ 377
VR++R+RNDDED+ + F+LVT +P + GL T+ ++ +
Sbjct: 77 VRVARKRNDDEDAKEEFFSLVTVAEIPAEGLSGLGTKVIEEEE 119
>At4g17250.1 68417.m02594 expressed protein
Length = 416
Score = 28.3 bits (60), Expect = 2.0
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +1
Query: 76 TVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVD 195
TV KR + +KKR A+K+ + E++ G P ++ D
Sbjct: 169 TVPATKRFLELKYKKRYEFALKQCPSYTERRRGVPKLKED 208
>At3g19400.2 68416.m02460 cysteine proteinase, putative
non-consensus AT acceptor site at exon 3; contains
similarity to cysteine protease CYP1 GI:2828252, TDI-65
GI:5726641 from [Lycopersicon esculentum]
Length = 290
Score = 28.3 bits (60), Expect = 2.0
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +1
Query: 70 EYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNKF 213
++ V K +G+G K+R + K+ KF ++ PD + L +F
Sbjct: 46 QWLVENRKNYNGLGEKERRFKIFKDNLKFVDEHNSVPDRTFEVGLTRF 93
>At3g19400.1 68416.m02461 cysteine proteinase, putative
non-consensus AT acceptor site at exon 3; contains
similarity to cysteine protease CYP1 GI:2828252, TDI-65
GI:5726641 from [Lycopersicon esculentum]
Length = 362
Score = 28.3 bits (60), Expect = 2.0
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +1
Query: 70 EYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNKF 213
++ V K +G+G K+R + K+ KF ++ PD + L +F
Sbjct: 46 QWLVENRKNYNGLGEKERRFKIFKDNLKFVDEHNSVPDRTFEVGLTRF 93
>At3g51220.1 68416.m05607 expressed protein contains Pfam doamin
PF05701: Plant protein of unknown function (DUF827)
Length = 186
Score = 27.5 bits (58), Expect = 3.5
Identities = 16/71 (22%), Positives = 31/71 (43%)
Frame = +1
Query: 1 KITMAKPKGERKGKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTP 180
K + K + E K S + E +T+E K H + P+ +++ E + P
Sbjct: 53 KENLKKAEEENKVLSQLIESLTQELETTKEKLNHSLRNFPEHPQVEDDLKFIEESTVNEP 112
Query: 181 DIRVDTRLNKF 213
D + ++N+F
Sbjct: 113 DNITEIKMNRF 123
>At5g32590.1 68418.m03867 myosin heavy chain-related similar to
Myosin heavy chain, non-muscle (Zipper protein) (Myosin
II)(SP:Q99323) {Drosophila melanogaster}
Length = 761
Score = 27.1 bits (57), Expect = 4.7
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -2
Query: 291 NLHHHYVFVKASPDTEGNISDSLRPK 214
N HH + VK SP + GN+ D L K
Sbjct: 174 NEHHPWFLVKKSPTSIGNLPDLLPSK 199
>At1g32900.1 68414.m04053 starch synthase, putative similar to
starch synthase SP:Q42857 from [Ipomoea batatas]
Length = 610
Score = 27.1 bits (57), Expect = 4.7
Identities = 14/55 (25%), Positives = 26/55 (47%)
Frame = +1
Query: 28 ERKGKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRV 192
E+KG + E +++ +N+ + G G KK + ++ KF K +G V
Sbjct: 412 EQKGSDILVEAISKFMGLNVQMVILGTGKKKMEAQILELEEKFPGKAVGVAKFNV 466
>At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 823
Score = 26.6 bits (56), Expect = 6.2
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Frame = -2
Query: 279 HYVFVKASPDTEGNISDSLRPKEFV*ASVYSNVRSSHLFFSELSDFFDC--SWGTLFKSN 106
HY+ + D+EG I + R Y RS+H F ++ ++ GT F+ N
Sbjct: 275 HYIEDRDLEDSEGYIFNRKRDSSSDGGPAYGRSRSTHRFPQDMHEYHGSPGEMGTSFRDN 334
>At3g43960.1 68416.m04706 cysteine proteinase, putative contains
similarity to cysteine proteinase RD21A (thiol protease)
GI:435619, SP:P43297 from [Arabidopsis thaliana]
Length = 376
Score = 26.2 bits (55), Expect = 8.2
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +1
Query: 55 EVVT--REYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNKF 213
EV+T ++ V K +G+G K+R + K+ K E+ P+ + LNKF
Sbjct: 36 EVLTMYEQWLVENGKNYNGLGEKERRFKIFKDNLKRIEEHNSDPNRSYERGLNKF 90
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,570,805
Number of Sequences: 28952
Number of extensions: 159324
Number of successful extensions: 370
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 359
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 370
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 585758608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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