Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0954
(673 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q4GXN1 Cluster: Ribosomal protein L5e; n=3; Coelomata|R... 152 6e-36
UniRef50_Q9W5R8 Cluster: 60S ribosomal protein L5; n=67; Eukaryo... 145 7e-34
UniRef50_P46777 Cluster: 60S ribosomal protein L5; n=107; Fungi/... 144 2e-33
UniRef50_P49405 Cluster: 60S ribosomal protein L5; n=57; Eukaryo... 134 1e-30
UniRef50_Q4YPV4 Cluster: Ribosomal protein family L5, putative; ... 109 5e-23
UniRef50_A0BUQ3 Cluster: Chromosome undetermined scaffold_13, wh... 109 6e-23
UniRef50_Q4FWT2 Cluster: 60S ribosomal protein L5, putative; n=4... 109 8e-23
UniRef50_A7R8T7 Cluster: Chromosome undetermined scaffold_2951, ... 103 4e-21
UniRef50_Q00V92 Cluster: T08009 probable ribosomal protein L5-gr... 97 5e-19
UniRef50_Q76KT0 Cluster: Ribosomal protein L5; n=4; Trichomonas ... 80 4e-14
UniRef50_Q231U7 Cluster: Ribosomal L18p/L5e family protein; n=1;... 74 3e-12
UniRef50_UPI00015535F0 Cluster: PREDICTED: cadherin 18; n=1; Mus... 64 2e-09
UniRef50_Q8SRQ3 Cluster: 60S RIBOSOMAL PROTEIN L5; n=1; Encephal... 64 3e-09
UniRef50_Q9AVW3 Cluster: 60S ribosomal protein L5; n=1; Guillard... 63 7e-09
UniRef50_Q3LRT7 Cluster: Putative uncharacterized protein; n=1; ... 63 7e-09
UniRef50_UPI0000F2C2C1 Cluster: PREDICTED: hypothetical protein;... 61 3e-08
UniRef50_A7PBC0 Cluster: Chromosome chr16 scaffold_10, whole gen... 53 7e-06
UniRef50_Q9YF94 Cluster: 50S ribosomal protein L18P; n=31; Archa... 47 5e-04
UniRef50_A3CT16 Cluster: Ribosomal protein L18P/L5E; n=1; Methan... 45 0.002
UniRef50_Q8PV31 Cluster: 50S ribosomal protein L18P; n=12; Archa... 40 0.041
UniRef50_P14123 Cluster: 50S ribosomal protein L18P; n=8; Euryar... 40 0.072
UniRef50_Q2NFX6 Cluster: 50S ribosomal protein L18P; n=2; Methan... 39 0.096
UniRef50_Q673Q9 Cluster: Ribosomal protein L18/L5; n=2; environm... 38 0.29
UniRef50_Q3LVV6 Cluster: Ribosomal protein L5; n=1; Bigelowiella... 35 1.6
UniRef50_Q4P153 Cluster: Putative uncharacterized protein; n=1; ... 35 1.6
UniRef50_Q9K4U6 Cluster: 15,16-dihydrobiliverdin:ferredoxin oxid... 35 2.1
UniRef50_Q0PH56 Cluster: TraG-like protein; n=5; Neisseria gonor... 33 4.8
>UniRef50_Q4GXN1 Cluster: Ribosomal protein L5e; n=3; Coelomata|Rep:
Ribosomal protein L5e - Hister sp. APV-2005
Length = 268
Score = 152 bits (369), Expect = 6e-36
Identities = 70/81 (86%), Positives = 75/81 (92%), Gaps = 1/81 (1%)
Frame = +3
Query: 42 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 221
MGFVKVVKNKQYFKR+QVKFKRRREGKTDYYARKRL+VQDKNKYNTPKYRLIVR SN+D+
Sbjct: 1 MGFVKVVKNKQYFKRFQVKFKRRREGKTDYYARKRLIVQDKNKYNTPKYRLIVRFSNRDI 60
Query: 222 TCQVAYSRIEG-TILCALLIH 281
TCQ+AYSRIEG ILCA H
Sbjct: 61 TCQIAYSRIEGDKILCAAYSH 81
Score = 87.8 bits (208), Expect = 2e-16
Identities = 38/43 (88%), Positives = 39/43 (90%)
Frame = +1
Query: 514 VFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFG 642
VF AMKGAVDGGLN+PHS KRFPGYDAESK FNAE HRAHIFG
Sbjct: 128 VFAAMKGAVDGGLNIPHSTKRFPGYDAESKTFNAEAHRAHIFG 170
Score = 58.8 bits (136), Expect(2) = 5e-13
Identities = 25/28 (89%), Positives = 26/28 (92%)
Frame = +2
Query: 425 EYNVEPVDNGPGAFRCYLDVGLARTTTG 508
EYNVE V+NGPGAFRCYLDVGL RTTTG
Sbjct: 98 EYNVESVENGPGAFRCYLDVGLNRTTTG 125
Score = 37.9 bits (84), Expect(2) = 5e-13
Identities = 15/16 (93%), Positives = 16/16 (100%)
Frame = +2
Query: 260 IVCAAYSHELPRYGVK 307
I+CAAYSHELPRYGVK
Sbjct: 74 ILCAAYSHELPRYGVK 89
>UniRef50_Q9W5R8 Cluster: 60S ribosomal protein L5; n=67;
Eukaryota|Rep: 60S ribosomal protein L5 - Drosophila
melanogaster (Fruit fly)
Length = 299
Score = 145 bits (352), Expect = 7e-34
Identities = 67/81 (82%), Positives = 73/81 (90%), Gaps = 1/81 (1%)
Frame = +3
Query: 42 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 221
MGFVKVVKNKQYFKRYQVKF+RRREGKTDYYARKRL QDKNKYNTPKYRLIVRLSNKD+
Sbjct: 1 MGFVKVVKNKQYFKRYQVKFRRRREGKTDYYARKRLTFQDKNKYNTPKYRLIVRLSNKDI 60
Query: 222 TCQVAYSRIEG-TILCALLIH 281
T Q+AY+RIEG ++CA H
Sbjct: 61 TVQIAYARIEGDRVVCAAYSH 81
Score = 106 bits (254), Expect = 6e-22
Identities = 49/83 (59%), Positives = 56/83 (67%)
Frame = +2
Query: 260 IVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVE 439
+VCAAYSHELP+YG++VGLTNYAAAY TG E+NVE
Sbjct: 74 VVCAAYSHELPKYGIQVGLTNYAAAYCTGLLVARRVLNKLGLDSLYAGCTEVTGEEFNVE 133
Query: 440 PVDNGPGAFRCYLDVGLARTTTG 508
PVD+GPGAFRC+LDVGLARTTTG
Sbjct: 134 PVDDGPGAFRCFLDVGLARTTTG 156
Score = 91.5 bits (217), Expect = 2e-17
Identities = 38/45 (84%), Positives = 43/45 (95%)
Frame = +1
Query: 508 SRVFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFG 642
+RVFGAMKGAVDGGLN+PHS+KRFPGY AE+K FNA+VHRAHIFG
Sbjct: 157 ARVFGAMKGAVDGGLNIPHSVKRFPGYSAETKSFNADVHRAHIFG 201
>UniRef50_P46777 Cluster: 60S ribosomal protein L5; n=107;
Fungi/Metazoa group|Rep: 60S ribosomal protein L5 - Homo
sapiens (Human)
Length = 297
Score = 144 bits (349), Expect = 2e-33
Identities = 64/81 (79%), Positives = 74/81 (91%), Gaps = 1/81 (1%)
Frame = +3
Query: 42 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 221
MGFVKVVKNK YFKRYQVKF+RRREGKTDYYARKRLV+QDKNKYNTPKYR+IVR++N+D+
Sbjct: 1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDI 60
Query: 222 TCQVAYSRIEG-TILCALLIH 281
CQ+AY+RIEG I+CA H
Sbjct: 61 ICQIAYARIEGDMIVCAAYAH 81
Score = 99.5 bits (237), Expect = 6e-20
Identities = 48/83 (57%), Positives = 51/83 (61%)
Frame = +2
Query: 260 IVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVE 439
IVCAAY+HELP+YGVKVGLTNYAAAY TG EYNVE
Sbjct: 74 IVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVEVTGDEYNVE 133
Query: 440 PVDNGPGAFRCYLDVGLARTTTG 508
+D PGAF CYLD GLARTTTG
Sbjct: 134 SIDGQPGAFTCYLDAGLARTTTG 156
Score = 85.0 bits (201), Expect = 1e-15
Identities = 35/45 (77%), Positives = 42/45 (93%)
Frame = +1
Query: 508 SRVFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFG 642
++VFGA+KGAVDGGL++PHS KRFPGYD+ESK+FNAEVHR HI G
Sbjct: 157 NKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNAEVHRKHIMG 201
>UniRef50_P49405 Cluster: 60S ribosomal protein L5; n=57;
Eukaryota|Rep: 60S ribosomal protein L5 - Caenorhabditis
elegans
Length = 293
Score = 134 bits (325), Expect = 1e-30
Identities = 60/76 (78%), Positives = 68/76 (89%)
Frame = +3
Query: 42 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 221
MG VKV+KNK YFKRYQVK +RRREGKTDYYARKRL VQDKNKYNTPKYRLIVR++NKDV
Sbjct: 1 MGLVKVIKNKAYFKRYQVKLRRRREGKTDYYARKRLTVQDKNKYNTPKYRLIVRITNKDV 60
Query: 222 TCQVAYSRIEGTILCA 269
Q+AYS+IEG ++ A
Sbjct: 61 VAQLAYSKIEGDVVVA 76
Score = 75.8 bits (178), Expect = 9e-13
Identities = 39/83 (46%), Positives = 47/83 (56%)
Frame = +2
Query: 260 IVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVE 439
+V +AYSHELPRYG+KVGLTNYAAAY+TG +YNVE
Sbjct: 74 VVASAYSHELPRYGLKVGLTNYAAAYATGLLLARRHLKTIGLDSTYKGHEELTGEDYNVE 133
Query: 440 PVDNGPGAFRCYLDVGLARTTTG 508
+ F+ LD+GLARTTTG
Sbjct: 134 E-EGDRAPFKAVLDIGLARTTTG 155
Score = 65.3 bits (152), Expect = 1e-09
Identities = 27/45 (60%), Positives = 33/45 (73%)
Frame = +1
Query: 508 SRVFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFG 642
S++F MKG DGG+NVPHS RF G+D ESK++NAE HR I G
Sbjct: 156 SKIFAVMKGVADGGINVPHSESRFFGFDQESKEYNAEAHRDRILG 200
>UniRef50_Q4YPV4 Cluster: Ribosomal protein family L5, putative;
n=4; Plasmodium (Vinckeia)|Rep: Ribosomal protein family
L5, putative - Plasmodium berghei
Length = 314
Score = 109 bits (263), Expect = 5e-23
Identities = 49/71 (69%), Positives = 57/71 (80%)
Frame = +3
Query: 42 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 221
M +VKVVKNK YFKRYQVK++RRREGKTDY ARK L++QDKNKYN K R IVR +N +
Sbjct: 1 MAYVKVVKNKAYFKRYQVKYRRRREGKTDYRARKALILQDKNKYNAQKLRFIVRKTNNQI 60
Query: 222 TCQVAYSRIEG 254
CQ+A S IEG
Sbjct: 61 ICQIASSHIEG 71
Score = 50.4 bits (115), Expect = 4e-05
Identities = 24/45 (53%), Positives = 29/45 (64%)
Frame = +1
Query: 508 SRVFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFG 642
+RVF A+KGA DGGLN+PH RFPG +FN E R +I G
Sbjct: 160 NRVFAALKGACDGGLNIPHGNNRFPG---SKNEFNPEQLRKNILG 201
Score = 42.7 bits (96), Expect = 0.008
Identities = 29/86 (33%), Positives = 37/86 (43%), Gaps = 3/86 (3%)
Frame = +2
Query: 260 IVCAAYSHELPRYGVKVGLTNYAAAYSTG---XXXXXXXXXXXXXXXXXXXXXXXXXXEY 430
I+ A S EL RYG+ VGL NYAAAY+TG E
Sbjct: 74 ILSEAKSKELIRYGIPVGLKNYAAAYATGLLCARRFLKSLNLDNQFIGVEKVTSESVAED 133
Query: 431 NVEPVDNGPGAFRCYLDVGLARTTTG 508
+ + + +LDVG+ RTTTG
Sbjct: 134 GDKEEEGDRKPIKAFLDVGITRTTTG 159
>UniRef50_A0BUQ3 Cluster: Chromosome undetermined scaffold_13, whole
genome shotgun sequence; n=3; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_13,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 338
Score = 109 bits (262), Expect = 6e-23
Identities = 46/71 (64%), Positives = 58/71 (81%)
Frame = +3
Query: 42 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 221
M FVK+VK YFKR+Q KF+RRREGKTDYYAR RL+VQDK+KYN+PKYR +VR +N +
Sbjct: 1 MAFVKLVKGTPYFKRFQTKFRRRREGKTDYYARSRLIVQDKDKYNSPKYRFVVRHTNTKI 60
Query: 222 TCQVAYSRIEG 254
CQV Y+ ++G
Sbjct: 61 ICQVIYATLKG 71
Score = 57.6 bits (133), Expect = 3e-07
Identities = 23/48 (47%), Positives = 37/48 (77%), Gaps = 3/48 (6%)
Frame = +1
Query: 508 SRVFGAMKGAVDGGLNVPHSIKRFPGYDAES---KKFNAEVHRAHIFG 642
+RVF A+KGA DGG+++PH+ +RFPG+ ++ +K++A VH+ IFG
Sbjct: 152 NRVFAALKGAADGGIHIPHNNRRFPGFSVDNDKKEKYDANVHKDRIFG 199
Score = 41.9 bits (94), Expect = 0.014
Identities = 19/29 (65%), Positives = 23/29 (79%)
Frame = +2
Query: 260 IVCAAYSHELPRYGVKVGLTNYAAAYSTG 346
+V AA S EL R+G+ GLTNYAAAY+TG
Sbjct: 74 VVAAAESTELKRFGLTSGLTNYAAAYATG 102
>UniRef50_Q4FWT2 Cluster: 60S ribosomal protein L5, putative; n=4;
Leishmania|Rep: 60S ribosomal protein L5, putative -
Leishmania major strain Friedlin
Length = 328
Score = 109 bits (261), Expect = 8e-23
Identities = 45/71 (63%), Positives = 62/71 (87%)
Frame = +3
Query: 42 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 221
M FVKVVKNK YFKR+QVK++RRREGKTDY+AR+++V+QDK K+ +PKYRL+VR++NKD+
Sbjct: 24 MPFVKVVKNKAYFKRFQVKYRRRREGKTDYHARRQMVLQDKTKFGSPKYRLVVRITNKDI 83
Query: 222 TCQVAYSRIEG 254
Q+ ++I G
Sbjct: 84 IAQIVQAKIVG 94
Score = 64.1 bits (149), Expect = 3e-09
Identities = 27/45 (60%), Positives = 33/45 (73%)
Frame = +1
Query: 508 SRVFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFG 642
+RVFG +KGAVDGG+ VPH RFPGY+ E +A+VHR IFG
Sbjct: 186 ARVFGVLKGAVDGGMAVPHRPNRFPGYNKEKSSLDAKVHRDRIFG 230
Score = 54.8 bits (126), Expect = 2e-06
Identities = 34/89 (38%), Positives = 42/89 (47%), Gaps = 6/89 (6%)
Frame = +2
Query: 260 IVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVE 439
+V AAY+HELP +G++ GLTNYAAAY+TG V
Sbjct: 97 VVMAAYAHELPAFGIEHGLTNYAAAYATGLLLARRTLAKLGIADKFQGAKEADGSYSAVR 156
Query: 440 PVDNGPG------AFRCYLDVGLARTTTG 508
+ G F+ LDVGLARTTTG
Sbjct: 157 TKKDDEGDDEERFPFKAILDVGLARTTTG 185
>UniRef50_A7R8T7 Cluster: Chromosome undetermined scaffold_2951,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome undetermined scaffold_2951, whole genome
shotgun sequence - Vitis vinifera (Grape)
Length = 117
Score = 103 bits (247), Expect = 4e-21
Identities = 55/101 (54%), Positives = 67/101 (66%)
Frame = +3
Query: 42 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 221
+ FVK K + Y KR+QVKFKRRR GKTDY AR RL+ QDKNKYNTPKYR +VR +NKD+
Sbjct: 12 LAFVKAQKTRAYSKRFQVKFKRRRAGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDI 71
Query: 222 TCQVAYSRIEGTILCALLIHMSCHVMV*RLV*QIMLQHIQL 344
T Q+ + I G + I M+C M + V QI Q I L
Sbjct: 72 TAQIISASIAGDM---RPIPMNCLTMGLKWVLQITRQLIVL 109
>UniRef50_Q00V92 Cluster: T08009 probable ribosomal protein L5-green
alga; n=1; Ostreococcus tauri|Rep: T08009 probable
ribosomal protein L5-green alga - Ostreococcus tauri
Length = 331
Score = 96.7 bits (230), Expect = 5e-19
Identities = 45/78 (57%), Positives = 55/78 (70%), Gaps = 3/78 (3%)
Frame = +3
Query: 57 VVKNKQYFKRYQVKFKRRREG--KTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQ 230
V K Y RYQVKF RRR G KTDY AR+RL+ QDKNKYN+PKYR +VR +N+DV CQ
Sbjct: 13 VAKTTAYQSRYQVKFARRRLGACKTDYQARQRLITQDKNKYNSPKYRFVVRFTNRDVVCQ 72
Query: 231 VAYSRIEGTI-LCALLIH 281
V Y+ + G + +CA H
Sbjct: 73 VVYATLSGDVTICAAYSH 90
Score = 77.4 bits (182), Expect = 3e-13
Identities = 36/82 (43%), Positives = 45/82 (54%)
Frame = +2
Query: 263 VCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEP 442
+CAAYSHELP+YG+K GLTNYAA Y+TG +Y+VE
Sbjct: 84 ICAAYSHELPKYGMKAGLTNYAATYATGLLCARRLLTKYGLADAYEGKTEDLGEDYHVEQ 143
Query: 443 VDNGPGAFRCYLDVGLARTTTG 508
D F+C+LD GL RT+TG
Sbjct: 144 GDEEARPFKCFLDTGLVRTSTG 165
Score = 54.8 bits (126), Expect = 2e-06
Identities = 23/45 (51%), Positives = 32/45 (71%)
Frame = +1
Query: 508 SRVFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFG 642
+RVF A+KGAVDGGL++PH+ KRF GYD + K + + +I G
Sbjct: 166 ARVFAALKGAVDGGLDIPHNEKRFAGYDLQDKSHDPDTLERYIKG 210
>UniRef50_Q76KT0 Cluster: Ribosomal protein L5; n=4; Trichomonas
vaginalis|Rep: Ribosomal protein L5 - Trichomonas
vaginalis
Length = 308
Score = 80.2 bits (189), Expect = 4e-14
Identities = 34/67 (50%), Positives = 45/67 (67%)
Frame = +3
Query: 54 KVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQV 233
K+VKN YF R+Q KF+RRRE KTDY R +L+ QDK KY KYRL+ R++N V Q+
Sbjct: 4 KLVKNAGYFSRFQTKFRRRREAKTDYVQRTQLIQQDKTKYGAAKYRLVARITNTKVIAQI 63
Query: 234 AYSRIEG 254
+ + G
Sbjct: 64 VVAELTG 70
Score = 55.2 bits (127), Expect = 1e-06
Identities = 34/82 (41%), Positives = 42/82 (51%)
Frame = +2
Query: 263 VCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEP 442
VC A S ELP+YG+K+GL+NY AAY+TG EY +
Sbjct: 74 VCQALSTELPKYGIKLGLSNYPAAYATG---LLVARRFLTQMKLADVFKTEITEEYLNDE 130
Query: 443 VDNGPGAFRCYLDVGLARTTTG 508
+ P F+ LDVGLARTTTG
Sbjct: 131 ENRRP--FKVILDVGLARTTTG 150
Score = 36.3 bits (80), Expect = 0.67
Identities = 14/23 (60%), Positives = 19/23 (82%)
Frame = +1
Query: 508 SRVFGAMKGAVDGGLNVPHSIKR 576
++VF MKGAVDGGL +PH++ R
Sbjct: 151 AKVFAVMKGAVDGGLFIPHNVCR 173
>UniRef50_Q231U7 Cluster: Ribosomal L18p/L5e family protein; n=1;
Tetrahymena thermophila SB210|Rep: Ribosomal L18p/L5e
family protein - Tetrahymena thermophila SB210
Length = 590
Score = 74.1 bits (174), Expect = 3e-12
Identities = 30/60 (50%), Positives = 45/60 (75%), Gaps = 1/60 (1%)
Frame = +3
Query: 93 VKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIE-GTILCA 269
++ K+ +G TDYYARKRL++QDK+KYNTPKYRL+ R +N + Q+ Y+ ++ +LCA
Sbjct: 307 IQIKQNYQGLTDYYARKRLIIQDKDKYNTPKYRLVARATNTRIIAQIVYATLKCDRVLCA 366
Score = 62.5 bits (145), Expect = 9e-09
Identities = 28/50 (56%), Positives = 35/50 (70%), Gaps = 5/50 (10%)
Frame = +1
Query: 508 SRVFGAMKGAVDGGLNVPHSIKRFPGY-----DAESKKFNAEVHRAHIFG 642
+RVFG +KGA DGG+N+PHS RFPGY + ES K+ E H+A IFG
Sbjct: 446 NRVFGVLKGACDGGINIPHSESRFPGYVRASDEGESSKYKPEDHKARIFG 495
Score = 56.0 bits (129), Expect = 8e-07
Identities = 30/83 (36%), Positives = 39/83 (46%)
Frame = +2
Query: 260 IVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVE 439
++CAA S+EL R+GV GL +YAAAY+TG +NV+
Sbjct: 363 VLCAADSYELKRFGVSTGLASYAAAYATGLLLARRLLKQIGLDTVYAGQTKVDGAYFNVD 422
Query: 440 PVDNGPGAFRCYLDVGLARTTTG 508
F+ LD GL RTTTG
Sbjct: 423 EDQKEKKPFKAILDAGLVRTTTG 445
Score = 45.2 bits (102), Expect = 0.001
Identities = 20/31 (64%), Positives = 25/31 (80%)
Frame = +3
Query: 42 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYY 134
+GFVKV+K K YFKR+Q K++RRR GK YY
Sbjct: 13 LGFVKVLKTKAYFKRFQTKYRRRR-GKQLYY 42
>UniRef50_UPI00015535F0 Cluster: PREDICTED: cadherin 18; n=1; Mus
musculus|Rep: PREDICTED: cadherin 18 - Mus musculus
Length = 339
Score = 64.5 bits (150), Expect = 2e-09
Identities = 45/131 (34%), Positives = 62/131 (47%)
Frame = +3
Query: 90 QVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGTILCA 269
+++F+R +EGKTDYYARKRL +QDKN+YNTP+ + + ++ C
Sbjct: 36 KLRFRRWQEGKTDYYARKRLEIQDKNEYNTPEXDDSSCNXQRYHLPDCIXKKFXSSVPC- 94
Query: 270 LLIHMSCHVMV*RLV*QIMLQHIQLVCY*HEDCFKDLDLTPYTLAQQMSQVMNTMLNLST 449
+HM MV +L IMLQ I L C L T A+ +NTM T
Sbjct: 95 --MHMKFQNMVXKLAXNIMLQPIALACCWPAGFXIGLAWTRSMKAKWRXMEVNTMWKALT 152
Query: 450 MDQEHLDVIWM 482
+ IWM
Sbjct: 153 VSLVPSLAIWM 163
>UniRef50_Q8SRQ3 Cluster: 60S RIBOSOMAL PROTEIN L5; n=1;
Encephalitozoon cuniculi|Rep: 60S RIBOSOMAL PROTEIN L5 -
Encephalitozoon cuniculi
Length = 283
Score = 64.1 bits (149), Expect = 3e-09
Identities = 27/62 (43%), Positives = 41/62 (66%)
Frame = +3
Query: 69 KQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQVAYSRI 248
+ Y K +QVK +RRREGKTDY R ++ QD N + K+RL+VR++ V CQ+ + +
Sbjct: 4 RNYHKNFQVKRRRRREGKTDYKHRTNMIRQDSNSCGSVKHRLVVRITGSRVICQIVAAYM 63
Query: 249 EG 254
+G
Sbjct: 64 DG 65
Score = 48.4 bits (110), Expect = 2e-04
Identities = 23/46 (50%), Positives = 31/46 (67%)
Frame = +1
Query: 508 SRVFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGF 645
+RVFGA+KGA D GLNVPHS +F G+ + F+A+ IFG+
Sbjct: 150 ARVFGALKGASDAGLNVPHSAAKFYGHKPDG-SFDAKELHDRIFGY 194
Score = 45.2 bits (102), Expect = 0.001
Identities = 29/84 (34%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Frame = +2
Query: 260 IVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNV- 436
++ A S EL RYG+ G TNY+AAY+TG Y+V
Sbjct: 68 VMVYADSRELERYGINFGATNYSAAYATG--FLIGRRALTAMSLDEVYRPKEIDGTYSVT 125
Query: 437 EPVDNGPGAFRCYLDVGLARTTTG 508
+ +D A R +LD+GLAR+T G
Sbjct: 126 KDIDGEKKAPRVFLDIGLARSTRG 149
>UniRef50_Q9AVW3 Cluster: 60S ribosomal protein L5; n=1; Guillardia
theta|Rep: 60S ribosomal protein L5 - Guillardia theta
(Cryptomonas phi)
Length = 232
Score = 62.9 bits (146), Expect = 7e-09
Identities = 26/66 (39%), Positives = 43/66 (65%)
Frame = +3
Query: 66 NKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQVAYSR 245
N Y R+++K +RRR GKTDY R +L+ QDK K+ K R+I+R S ++++ Q+ S
Sbjct: 9 NASYHSRFKLKKRRRRIGKTDYKKRMKLIRQDKKKFENKKKRIIIRFSKRNLSLQMVNSN 68
Query: 246 IEGTIL 263
++G +
Sbjct: 69 VDGDFI 74
Score = 33.1 bits (72), Expect = 6.3
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Frame = +1
Query: 508 SRVFGAMKGAVDGGLNVPHS---IKRFPGYDAESKK-FNAEVHRAHIFGF 645
++ F +MKG+VD G+N+PH+ I + + +SK+ FN HI +
Sbjct: 143 NKSFASMKGSVDSGINIPHNYNKIFKVKNNEIDSKELFNERSKGIHIIKY 192
>UniRef50_Q3LRT7 Cluster: Putative uncharacterized protein; n=1;
Theileria sp. CAAS-2005|Rep: Putative uncharacterized
protein - Theileria sp. CAAS-2005
Length = 255
Score = 62.9 bits (146), Expect = 7e-09
Identities = 28/48 (58%), Positives = 36/48 (75%), Gaps = 3/48 (6%)
Frame = +1
Query: 508 SRVFGAMKGAVDGGLNVPHSIKRFPGYDAESKK---FNAEVHRAHIFG 642
+RVFGA+KGA DGGL+VPHS KRFPGY + + ++A+ HR IFG
Sbjct: 106 NRVFGALKGACDGGLHVPHSEKRFPGYSVDEENNGTYDAQAHRDRIFG 153
Score = 54.0 bits (124), Expect = 3e-06
Identities = 32/80 (40%), Positives = 37/80 (46%)
Frame = +2
Query: 269 AAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVD 448
+A S EL YGVKVGLTNYAAAY TG Y+VE +
Sbjct: 26 SADSAELVHYGVKVGLTNYAAAYCTGLLLARRLLTKLKLDSQFVGKLEVDGEVYHVEEEE 85
Query: 449 NGPGAFRCYLDVGLARTTTG 508
N F+ LDVG+ TTG
Sbjct: 86 NERRPFKALLDVGVKNVTTG 105
>UniRef50_UPI0000F2C2C1 Cluster: PREDICTED: hypothetical protein;
n=1; Monodelphis domestica|Rep: PREDICTED: hypothetical
protein - Monodelphis domestica
Length = 161
Score = 60.9 bits (141), Expect = 3e-08
Identities = 27/45 (60%), Positives = 35/45 (77%)
Frame = +1
Query: 508 SRVFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFG 642
++VFGA+K VD GL++PHS K FPGYD+ SK+FNAEV+ I G
Sbjct: 79 NKVFGALKEPVDCGLSIPHSTKCFPGYDSVSKEFNAEVYCKDIMG 123
Score = 55.2 bits (127), Expect = 1e-06
Identities = 24/29 (82%), Positives = 26/29 (89%)
Frame = +2
Query: 260 IVCAAYSHELPRYGVKVGLTNYAAAYSTG 346
IVCAAY+HELP+ GVKVGLTNYAAAY G
Sbjct: 24 IVCAAYAHELPKSGVKVGLTNYAAAYCIG 52
>UniRef50_A7PBC0 Cluster: Chromosome chr16 scaffold_10, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr16 scaffold_10, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 128
Score = 52.8 bits (121), Expect = 7e-06
Identities = 21/43 (48%), Positives = 32/43 (74%)
Frame = +1
Query: 514 VFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFG 642
VFG +K A+DG LN+PH+ +RF G ++K+ +A+VHR I+G
Sbjct: 72 VFGVLKEALDGSLNIPHNDRRFVGSSKDNKQLDAKVHRKSIYG 114
>UniRef50_Q9YF94 Cluster: 50S ribosomal protein L18P; n=31;
Archaea|Rep: 50S ribosomal protein L18P - Aeropyrum
pernix
Length = 214
Score = 46.8 bits (106), Expect = 5e-04
Identities = 27/57 (47%), Positives = 36/57 (63%)
Frame = +3
Query: 84 RYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEG 254
RY+V +RRREGKT+YY R RLV + K R+ VR+SN+ + Q +RIEG
Sbjct: 6 RYRVPLRRRREGKTNYYRRFRLV-------KSGKPRMAVRISNEYLWVQFLEARIEG 55
Score = 37.9 bits (84), Expect = 0.22
Identities = 15/26 (57%), Positives = 20/26 (76%)
Frame = +1
Query: 508 SRVFGAMKGAVDGGLNVPHSIKRFPG 585
SRVF A+KGA+D G+ +PHS + PG
Sbjct: 115 SRVFAALKGALDAGVEIPHSEEILPG 140
>UniRef50_A3CT16 Cluster: Ribosomal protein L18P/L5E; n=1;
Methanoculleus marisnigri JR1|Rep: Ribosomal protein
L18P/L5E - Methanoculleus marisnigri (strain ATCC 35101
/ DSM 1498 / JR1)
Length = 175
Score = 44.8 bits (101), Expect = 0.002
Identities = 24/57 (42%), Positives = 33/57 (57%)
Frame = +3
Query: 84 RYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEG 254
RY V F+RR EGKTDYY R L+ TP R++VR +N+ + Q+ +EG
Sbjct: 6 RYFVPFRRRHEGKTDYYKRMSLL-----SSGTP--RMVVRKTNRQIIVQLVVPEVEG 55
Score = 33.1 bits (72), Expect = 6.3
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = +1
Query: 508 SRVFGAMKGAVDGGLNVPHSIKRFP 582
+RVF A+KGAVD GL+VP+ P
Sbjct: 114 ARVFAALKGAVDAGLDVPYGESILP 138
>UniRef50_Q8PV31 Cluster: 50S ribosomal protein L18P; n=12;
Archaea|Rep: 50S ribosomal protein L18P - Methanosarcina
mazei (Methanosarcina frisia)
Length = 174
Score = 40.3 bits (90), Expect = 0.041
Identities = 22/59 (37%), Positives = 37/59 (62%)
Frame = +3
Query: 84 RYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGTI 260
RY+V F+RRREG+T+Y+ R +L++ ++ R++VR S ++V Q+ EG I
Sbjct: 6 RYKVPFRRRREGRTNYHLRLKLLLSGQD-------RVVVRKSARNVQIQLLAPTPEGDI 57
>UniRef50_P14123 Cluster: 50S ribosomal protein L18P; n=8;
Euryarchaeota|Rep: 50S ribosomal protein L18P -
Haloarcula marismortui (Halobacterium marismortui)
Length = 187
Score = 39.5 bits (88), Expect = 0.072
Identities = 22/50 (44%), Positives = 30/50 (60%)
Frame = +3
Query: 84 RYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQV 233
RY+V +RRRE +TDY+ R RL+ + K RL+ R SNK V Q+
Sbjct: 6 RYKVPMRRRREARTDYHQRLRLL-------KSGKPRLVARKSNKHVRAQL 48
>UniRef50_Q2NFX6 Cluster: 50S ribosomal protein L18P; n=2;
Methanobacteriaceae|Rep: 50S ribosomal protein L18P -
Methanosphaera stadtmanae (strain DSM 3091)
Length = 193
Score = 39.1 bits (87), Expect = 0.096
Identities = 23/47 (48%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Frame = +3
Query: 87 YQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRL-SNKDVT 224
Y+V+FKRRREGKT+Y R +LV DK R++VR+ SN +T
Sbjct: 7 YKVQFKRRREGKTNYNKRYKLVDLDKT-------RMVVRITSNHTIT 46
>UniRef50_Q673Q9 Cluster: Ribosomal protein L18/L5; n=2;
environmental samples|Rep: Ribosomal protein L18/L5 -
uncultured marine group II euryarchaeote DeepAnt-JyKC7
Length = 171
Score = 37.5 bits (83), Expect = 0.29
Identities = 20/51 (39%), Positives = 29/51 (56%)
Frame = +3
Query: 81 KRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQV 233
K +++FKRRR G+TDY R R++ R +VR+SN TCQ+
Sbjct: 5 KNQRLRFKRRRTGETDYRRRMRML-------RGGATRAVVRVSNTQTTCQL 48
>UniRef50_Q3LVV6 Cluster: Ribosomal protein L5; n=1; Bigelowiella
natans|Rep: Ribosomal protein L5 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 252
Score = 35.1 bits (77), Expect = 1.6
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Frame = +3
Query: 42 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYAR--KRLVVQDKNKYNTPKYRLIVRLSNK 215
M + K++KN YF ++ VK +R R+ T Y R + NK + K+R +N
Sbjct: 1 MIYQKIIKNASYFSKFVVKHRRNRKFLTKYGKSYDSRFLKSYTNK--SKKFRSYFTTTNT 58
Query: 216 DVTCQVAYSRIEGTILCA 269
+++ + +S + G + A
Sbjct: 59 NLSGVITFSSLSGDTIVA 76
>UniRef50_Q4P153 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 534
Score = 35.1 bits (77), Expect = 1.6
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Frame = -3
Query: 377 VFEAVFVLIADQLNMLQHNLSDQPSHHNVATHVNKQRT----QYGTFNPRVGHLA 225
+F A+ DQ +L H++++ H+ A+H ++ Q+ FNP +GH A
Sbjct: 120 IFSAMNAAQFDQYGLLSHSVANASHQHHAASHQHQHHQQPHHQHAAFNPALGHAA 174
>UniRef50_Q9K4U6 Cluster: 15,16-dihydrobiliverdin:ferredoxin
oxidoreductase; n=1; Prochlorococcus marinus|Rep:
15,16-dihydrobiliverdin:ferredoxin oxidoreductase -
Prochlorococcus marinus
Length = 241
Score = 34.7 bits (76), Expect = 2.1
Identities = 18/65 (27%), Positives = 35/65 (53%)
Frame = +3
Query: 42 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 221
+ F +V+ ++YF RY + + D+ ++K + + D NKY +P + L+ S D+
Sbjct: 102 LDFQPLVQEERYFCRYYKDLQILKNRFVDFNSQKTMKIYDSNKYFSP-WVLLYNGSFDDL 160
Query: 222 TCQVA 236
C +A
Sbjct: 161 QCSLA 165
>UniRef50_Q0PH56 Cluster: TraG-like protein; n=5; Neisseria
gonorrhoeae|Rep: TraG-like protein - Neisseria
gonorrhoeae
Length = 1138
Score = 33.5 bits (73), Expect = 4.8
Identities = 24/90 (26%), Positives = 42/90 (46%)
Frame = -3
Query: 377 VFEAVFVLIADQLNMLQHNLSDQPSHHNVATHVNKQRTQYGTFNPRVGHLACYIFVGETH 198
+F V + + + NMLQ+N + N A K RT++ + N G++A +F G
Sbjct: 204 LFTNVSQIASRRGNMLQYNGKSKTMTCNEAAKELKDRTRFYSKNYLPGYIADRVFAGLGT 263
Query: 197 NQTIFRCVIFVLVLNNEAFTSIIISFPFTT 108
N V ++ L N +F ++ + F T
Sbjct: 264 NSAGINRVNALVTLGNSSFQYLLDNARFDT 293
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 665,515,996
Number of Sequences: 1657284
Number of extensions: 13100976
Number of successful extensions: 30388
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 29489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30362
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 51652897375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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