Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0954
(673 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch... 113 2e-26
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo... 113 2e-26
SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr 3|||Ma... 27 1.9
SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual 27 2.5
SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb... 27 3.3
SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|ch... 25 9.9
>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
L5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 294
Score = 113 bits (273), Expect = 2e-26
Identities = 49/76 (64%), Positives = 59/76 (77%)
Frame = +3
Query: 42 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 221
M F+K VK+ YF RYQ K++RRREGKTDYYARKRL+ Q KNKYN PKYRL+VR SN+ V
Sbjct: 1 MPFIKAVKSSPYFSRYQTKYRRRREGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFV 60
Query: 222 TCQVAYSRIEGTILCA 269
TCQ+ SR+ G + A
Sbjct: 61 TCQIVSSRVNGDYVLA 76
Score = 62.5 bits (145), Expect = 5e-11
Identities = 27/45 (60%), Positives = 35/45 (77%)
Frame = +1
Query: 508 SRVFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFG 642
SRVFGAMKGA DGGL +PHS RFPG+D E+++ + E R +I+G
Sbjct: 157 SRVFGAMKGASDGGLFIPHSPNRFPGFDIETEELDDETLRKYIYG 201
Score = 59.7 bits (138), Expect = 4e-10
Identities = 30/84 (35%), Positives = 43/84 (51%)
Frame = +2
Query: 257 HIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNV 436
+++ A+S ELPRYG+K GL N+ AAY+TG
Sbjct: 73 YVLAHAHSSELPRYGIKWGLANWTAAYATGLLVARRALAKVGLADKYEGVTEPEGEFELT 132
Query: 437 EPVDNGPGAFRCYLDVGLARTTTG 508
E +++GP F+ +LDVGL RT+TG
Sbjct: 133 EAIEDGPRPFKVFLDVGLKRTSTG 156
>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
L5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 294
Score = 113 bits (273), Expect = 2e-26
Identities = 49/76 (64%), Positives = 59/76 (77%)
Frame = +3
Query: 42 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 221
M F+K VK+ YF RYQ K++RRREGKTDYYARKRL+ Q KNKYN PKYRL+VR SN+ V
Sbjct: 1 MPFIKAVKSSPYFSRYQTKYRRRREGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFV 60
Query: 222 TCQVAYSRIEGTILCA 269
TCQ+ SR+ G + A
Sbjct: 61 TCQIVSSRVNGDYVLA 76
Score = 62.5 bits (145), Expect = 5e-11
Identities = 27/45 (60%), Positives = 35/45 (77%)
Frame = +1
Query: 508 SRVFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFG 642
SRVFGAMKGA DGGL +PHS RFPG+D E+++ + E R +I+G
Sbjct: 157 SRVFGAMKGASDGGLFIPHSPNRFPGFDIETEELDDETLRKYIYG 201
Score = 59.7 bits (138), Expect = 4e-10
Identities = 30/84 (35%), Positives = 43/84 (51%)
Frame = +2
Query: 257 HIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNV 436
+++ A+S ELPRYG+K GL N+ AAY+TG
Sbjct: 73 YVLAHAHSSELPRYGIKWGLANWTAAYATGLLVARRALAKVGLADKYEGVTEPEGEFELT 132
Query: 437 EPVDNGPGAFRCYLDVGLARTTTG 508
E +++GP F+ +LDVGL RT+TG
Sbjct: 133 EAIEDGPRPFKVFLDVGLKRTSTG 156
>SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr
3|||Manual
Length = 396
Score = 27.5 bits (58), Expect = 1.9
Identities = 12/47 (25%), Positives = 22/47 (46%)
Frame = -3
Query: 383 VQVFEAVFVLIADQLNMLQHNLSDQPSHHNVATHVNKQRTQYGTFNP 243
+Q F L+ N+ NLS QP +++ + + +G +NP
Sbjct: 10 IQAFRKQVPLVEKNENITFFNLSFQPPMNSIVANTINEYVDWGLYNP 56
>SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual
Length = 307
Score = 27.1 bits (57), Expect = 2.5
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = -3
Query: 371 EAVFVLIADQLNMLQHNLSDQPSHHNVATHV 279
EAV + + D + L +LSD+ S+ ++A H+
Sbjct: 169 EAVVLRVIDPSSKLAEDLSDEQSYRSLAEHI 199
>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 840
Score = 26.6 bits (56), Expect = 3.3
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Frame = -3
Query: 170 FVLVLNNEAFTSIIISFPFTTPLEFYLVPLEVLFVLHNFNESHIL---NLSYKVASTS 6
F +L T + +SF F+T + + + LF H F+ S ++ N+ Y+V S S
Sbjct: 469 FATILAAFGTTLLSLSFVFSTSAQELMSSIIFLFSKHPFDISDVVIVNNIKYEVVSLS 526
>SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 274
Score = 25.0 bits (52), Expect = 9.9
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = -3
Query: 329 QHNLSDQPSHHNVATHVNKQRTQYGTFNPRVGHL 228
QH+L + H TH+ K++ F RV +L
Sbjct: 59 QHDLDQEQDAHPRTTHLQKRQHSENRFGVRVENL 92
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,791,875
Number of Sequences: 5004
Number of extensions: 57138
Number of successful extensions: 163
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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