Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0954
         (673 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1659 + 38961637-38961639,38962361-38962433,38962531-389626...   101   4e-22
01_06_1660 + 38966999-38967001,38967685-38967757,38967841-389679...   100   2e-21
01_01_0182 - 1561779-1561873,1561977-1562050,1562140-1562207,156...    28   5.9  
03_01_0038 - 340564-341108,341214-341463,341546-341649,341728-34...    28   7.8  

>01_06_1659 +
           38961637-38961639,38962361-38962433,38962531-38962613,
           38962732-38962858,38962950-38963029,38963112-38963228,
           38963393-38963527,38963714-38963883,38963970-38964087
          Length = 301

 Score =  101 bits (243), Expect = 4e-22
 Identities = 48/75 (64%), Positives = 56/75 (74%)
 Frame = +3

Query: 45  GFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVT 224
           GFVK  K   YFKR+QVKFKRRR+GKTDY AR RL  QDKNKYNTPKYR +   +NKD+T
Sbjct: 3   GFVKTQKTHAYFKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFV---TNKDIT 59

Query: 225 CQVAYSRIEGTILCA 269
            Q+ Y+ I G I+ A
Sbjct: 60  AQIVYATIAGDIVMA 74



 Score = 74.1 bits (174), Expect = 9e-14
 Identities = 40/83 (48%), Positives = 45/83 (54%)
 Frame = +2

Query: 260 IVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVE 439
           ++ AAYSHELPRYG++VGLTNYAAAY TG                          +Y VE
Sbjct: 72  VMAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLTLRGLDQEYEGNVEATGEDYYVE 131

Query: 440 PVDNGPGAFRCYLDVGLARTTTG 508
           P D     FR  LDVGL RTTTG
Sbjct: 132 PADE-RRPFRALLDVGLIRTTTG 153



 Score = 64.5 bits (150), Expect = 7e-11
 Identities = 24/45 (53%), Positives = 38/45 (84%)
 Frame = +1

Query: 508 SRVFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFG 642
           +RVFGA+KGA+DGGL++PHS KRF G+  + K+ ++++HR +I+G
Sbjct: 154 NRVFGALKGALDGGLDIPHSDKRFAGFKKDEKQLDSDIHRKYIYG 198


>01_06_1660 +
           38966999-38967001,38967685-38967757,38967841-38967923,
           38968042-38968168,38968260-38968339,38968428-38968544,
           38968711-38968845,38969046-38969215,38969300-38969417
          Length = 301

 Score = 99.5 bits (237), Expect = 2e-21
 Identities = 47/75 (62%), Positives = 55/75 (73%)
 Frame = +3

Query: 45  GFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVT 224
           GFVK  K   Y KR+QVKFKRRR+GKTDY AR RL  QDKNKYNTPKYR +   +NKD+T
Sbjct: 3   GFVKTQKTNAYHKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFV---TNKDIT 59

Query: 225 CQVAYSRIEGTILCA 269
            Q+ Y+ I G I+ A
Sbjct: 60  AQIVYATIAGDIVMA 74



 Score = 74.1 bits (174), Expect = 9e-14
 Identities = 40/83 (48%), Positives = 45/83 (54%)
 Frame = +2

Query: 260 IVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVE 439
           ++ AAYSHELPRYG++VGLTNYAAAY TG                          +Y VE
Sbjct: 72  VMAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKLRGLDQEYEGNIEATGEDYYVE 131

Query: 440 PVDNGPGAFRCYLDVGLARTTTG 508
           P D     FR  LDVGL RTTTG
Sbjct: 132 PADE-RRPFRALLDVGLIRTTTG 153



 Score = 64.5 bits (150), Expect = 7e-11
 Identities = 24/45 (53%), Positives = 38/45 (84%)
 Frame = +1

Query: 508 SRVFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFG 642
           +RVFGA+KGA+DGGL++PHS KRF G+  + K+ ++++HR +I+G
Sbjct: 154 NRVFGALKGALDGGLDIPHSDKRFAGFKKDEKQLDSDIHRKYIYG 198


>01_01_0182 -
           1561779-1561873,1561977-1562050,1562140-1562207,
           1562279-1562371,1562521-1562604,1562697-1562752,
           1562843-1562950,1563051-1563225,1563237-1563422
          Length = 312

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/64 (25%), Positives = 31/64 (48%)
 Frame = -3

Query: 233 HLACYIFVGETHNQTIFRCVIFVLVLNNEAFTSIIISFPFTTPLEFYLVPLEVLFVLHNF 54
           HL  Y +  +  ++  FR       +NN  +TS ++++  T+P   Y +   +LF+ H  
Sbjct: 113 HLCSYTYDRDCKDEDSFRGRCVAGAINN--YTSQLLTYDATSPSTQYNLTQALLFLAHFV 170

Query: 53  NESH 42
            + H
Sbjct: 171 GDIH 174


>03_01_0038 -
           340564-341108,341214-341463,341546-341649,341728-343255,
           343995-344056,344578-344728
          Length = 879

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -2

Query: 261 IWYLQSESRPPGMLHLCWRDAQSDDI*VCYICSC 160
           +WYL+ E   P M+    +  Q+DD+ + + C C
Sbjct: 748 VWYLEDELISPCMIEELHQGNQTDDLKLPFDCIC 781


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,092,968
Number of Sequences: 37544
Number of extensions: 364638
Number of successful extensions: 717
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)