Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0954
(673 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_35225| Best HMM Match : Ribosomal_L18p (HMM E-Value=4e-30) 101 4e-22
SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0) 93 2e-19
SB_56909| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_56560| Best HMM Match : GBP_C (HMM E-Value=0.065) 29 3.4
SB_59374| Best HMM Match : Peptidase_A17 (HMM E-Value=0) 29 3.4
SB_46324| Best HMM Match : Peptidase_A17 (HMM E-Value=0) 29 3.4
SB_44075| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_39193| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.029) 29 3.4
SB_25615| Best HMM Match : Peptidase_A17 (HMM E-Value=4.5e-10) 29 3.4
SB_19321| Best HMM Match : Peptidase_A17 (HMM E-Value=0) 29 3.4
SB_5393| Best HMM Match : Peptidase_A17 (HMM E-Value=0) 29 3.4
SB_616| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_43459| Best HMM Match : VWA (HMM E-Value=1.8e-23) 28 6.0
SB_21495| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_18587| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048) 28 7.9
>SB_35225| Best HMM Match : Ribosomal_L18p (HMM E-Value=4e-30)
Length = 113
Score = 101 bits (243), Expect = 4e-22
Identities = 48/83 (57%), Positives = 53/83 (63%)
Frame = +2
Query: 260 IVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVE 439
I+CAAY+HELPRYGVKVGLTNYAAAY TG EYNVE
Sbjct: 11 IICAAYAHELPRYGVKVGLTNYAAAYCTGLLLARRLLTKLNLHEIYTGTEEVNGDEYNVE 70
Query: 440 PVDNGPGAFRCYLDVGLARTTTG 508
+D PGAFRC+LDVGLART+TG
Sbjct: 71 SIDGSPGAFRCFLDVGLARTSTG 93
Score = 39.1 bits (87), Expect = 0.003
Identities = 15/19 (78%), Positives = 18/19 (94%)
Frame = +1
Query: 508 SRVFGAMKGAVDGGLNVPH 564
+RVFGA+KGAVDGGL +PH
Sbjct: 94 ARVFGALKGAVDGGLEIPH 112
>SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0)
Length = 328
Score = 92.7 bits (220), Expect = 2e-19
Identities = 44/83 (53%), Positives = 51/83 (61%)
Frame = +2
Query: 260 IVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVE 439
++ +AY+HELP +GVKVGLTNYAAAY TG EYNVE
Sbjct: 106 VLASAYAHELPNFGVKVGLTNYAAAYCTGLLLARRLLTMLNLHEIYTGTDDVNGDEYNVE 165
Query: 440 PVDNGPGAFRCYLDVGLARTTTG 508
VD PGAFRC+LDVGLART+TG
Sbjct: 166 SVDGSPGAFRCFLDVGLARTSTG 188
Score = 85.8 bits (203), Expect = 3e-17
Identities = 36/45 (80%), Positives = 42/45 (93%)
Frame = +1
Query: 508 SRVFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFG 642
+RVFGA+KGAVDGGL +PHS+KRFPGYD+ESK F+AEVHR HIFG
Sbjct: 189 ARVFGALKGAVDGGLEIPHSMKRFPGYDSESKDFSAEVHRNHIFG 233
Score = 80.6 bits (190), Expect = 1e-15
Identities = 32/42 (76%), Positives = 38/42 (90%)
Frame = +3
Query: 105 RRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQ 230
RR +GKTDYYARKRL+ QDKNKYNTPKYR +VR++NKD+ CQ
Sbjct: 17 RRSQGKTDYYARKRLITQDKNKYNTPKYRFVVRITNKDIICQ 58
>SB_56909| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1379
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -2
Query: 609 ELFGFCIIARESFDGMRNIEATVNSTLHSSKDTRPVVVRAK 487
+ FGF + E D MR + +T++S PV++R K
Sbjct: 564 DTFGFKVSNTEKADTMRGVLSTISSVFDPLNFAAPVIMRGK 604
>SB_56560| Best HMM Match : GBP_C (HMM E-Value=0.065)
Length = 557
Score = 29.1 bits (62), Expect = 3.4
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = -3
Query: 380 QVFEAVFVLIADQLNMLQHNLSDQPSHHNVATHVNKQRTQYGTFNPRVGHLACYIF 213
++ + ++L D ++ L PS A+ +NKQ T+Y +F P G LA F
Sbjct: 180 KIRQTEWMLNTDLVSFALSELEFSPSIDLFASRLNKQFTRYVSFKPDPGALAVDTF 235
>SB_59374| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
Length = 266
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -2
Query: 609 ELFGFCIIARESFDGMRNIEATVNSTLHSSKDTRPVVVRAK 487
+ FGF + E D MR + +T++S PV++R K
Sbjct: 43 DTFGFKVSNTEKADTMRGVLSTISSVFDPLNFAAPVIMRGK 83
>SB_46324| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
Length = 266
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -2
Query: 609 ELFGFCIIARESFDGMRNIEATVNSTLHSSKDTRPVVVRAK 487
+ FGF + E D MR + +T++S PV++R K
Sbjct: 43 DTFGFKVSNTEKADTMRGVLSTISSVFDPLNFAAPVIMRGK 83
>SB_44075| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 388
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -2
Query: 609 ELFGFCIIARESFDGMRNIEATVNSTLHSSKDTRPVVVRAK 487
+ FGF + E D MR + +T++S PV++R K
Sbjct: 43 DTFGFKVSNTEKADTMRGVLSTISSVFDPLNFAAPVIMRGK 83
>SB_39193| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.029)
Length = 1769
Score = 29.1 bits (62), Expect = 3.4
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = -3
Query: 380 QVFEAVFVLIADQLNMLQHNLSDQPSHHNVATHVNKQRTQYGTFNPRVGHLACYIF 213
++ + ++L D ++ L PS A+ +NKQ T+Y +F P G LA F
Sbjct: 340 KIRQTEWMLNTDLVSFALSELEFSPSIDLFASRLNKQFTRYVSFKPDPGALAVDTF 395
>SB_25615| Best HMM Match : Peptidase_A17 (HMM E-Value=4.5e-10)
Length = 475
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -2
Query: 609 ELFGFCIIARESFDGMRNIEATVNSTLHSSKDTRPVVVRAK 487
+ FGF + E D MR + +T++S PV++R K
Sbjct: 365 DTFGFKVSNTEKADTMRGVLSTISSVFDPLNFAAPVIMRGK 405
>SB_19321| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
Length = 780
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -2
Query: 609 ELFGFCIIARESFDGMRNIEATVNSTLHSSKDTRPVVVRAK 487
+ FGF + E D MR + +T++S PV++R K
Sbjct: 212 DTFGFKVSNTEKADTMRGVLSTISSVFDPLNFAAPVIMRGK 252
>SB_5393| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
Length = 1244
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -2
Query: 609 ELFGFCIIARESFDGMRNIEATVNSTLHSSKDTRPVVVRAK 487
+ FGF + E D MR + +T++S PV++R K
Sbjct: 881 DTFGFKVSNTEKADTMRGVLSTISSVFDPLNFAAPVIMRGK 921
>SB_616| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1515
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -2
Query: 609 ELFGFCIIARESFDGMRNIEATVNSTLHSSKDTRPVVVRAK 487
+ FGF + E D MR + +T++S PV++R K
Sbjct: 1159 DTFGFKVSNTEKADTMRGVLSTISSVFDPLNFAAPVIMRGK 1199
>SB_43459| Best HMM Match : VWA (HMM E-Value=1.8e-23)
Length = 232
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -3
Query: 128 ISFPFTTPLEFYLVPLEVLFVLHNFNESHILNLSYK 21
ISFPFTT E Y +V F+ N LNL+ +
Sbjct: 119 ISFPFTTRKEAYRQLSKVPFIAGTTNTQEALNLAQR 154
>SB_21495| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1418
Score = 28.3 bits (60), Expect = 6.0
Identities = 25/90 (27%), Positives = 39/90 (43%)
Frame = +3
Query: 180 PKYRLIVRLSNKDVTCQVAYSRIEGTILCALLIHMSCHVMV*RLV*QIMLQHIQLVCY*H 359
P+Y+ I++ SN + A + L L MSC + R++ Q+ L I + H
Sbjct: 839 PQYKRILKYSNSSQSISTAINEFTNGCLKKLTYTMSCRLRTLRMIRQLKLTLINDL---H 895
Query: 360 EDCFKDLDLTPYTLAQQMSQVMNTMLNLST 449
+ F T TL S + +L LST
Sbjct: 896 QPLF-----TIITLVLPSSTFITLVLPLST 920
>SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2735
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +3
Query: 60 VKNKQYFKRYQVKFKRRREGKTDYYARKRLVV 155
VK+K+ KR K KR+ + K+D + RK+ ++
Sbjct: 228 VKHKRKQKRKSAKHKRKHKRKSDKHKRKQTLI 259
>SB_18587| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 91
Score = 27.9 bits (59), Expect = 7.9
Identities = 18/66 (27%), Positives = 30/66 (45%)
Frame = +3
Query: 72 QYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIE 251
Q FK + + F+ + D K L + K KY T +YR+ + + T + R
Sbjct: 14 QSFKEWTLCFEAKEMYLEDQ--NKALSGKSKYKYPTKRYRVKENIFTRPFTLKQPEVRCS 71
Query: 252 GTILCA 269
G I+C+
Sbjct: 72 GRIMCS 77
>SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048)
Length = 1952
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +3
Query: 45 GFVKVVKNKQYFKRYQVKFKRRREGKTDY 131
GF++ +K + RY VK R R DY
Sbjct: 1090 GFIEALKRRDVSSRYNVKHARFRRATNDY 1118
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,124,647
Number of Sequences: 59808
Number of extensions: 434696
Number of successful extensions: 1080
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 990
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1078
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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