Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0954
(673 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC132972-1|AAI32973.1| 297|Homo sapiens ribosomal protein L5 pr... 144 3e-34
BC132970-1|AAI32971.1| 297|Homo sapiens ribosomal protein L5 pr... 144 3e-34
BC109370-1|AAI09371.1| 297|Homo sapiens ribosomal protein L5 pr... 144 3e-34
BC001882-1|AAH01882.1| 101|Homo sapiens RPL5 protein protein. 144 3e-34
AL162740-1|CAI22505.1| 297|Homo sapiens ribosomal protein L5 pr... 144 3e-34
AK222604-1|BAD96324.1| 297|Homo sapiens ribosomal protein L5 va... 144 3e-34
AB208980-1|BAD92217.1| 303|Homo sapiens ribosomal protein L5 va... 144 3e-34
U14966-1|AAA85654.1| 297|Homo sapiens ribosomal protein L5 prot... 144 3e-34
AL162740-2|CAI22506.1| 126|Homo sapiens ribosomal protein L5 pr... 100 9e-21
U76609-1|AAB18361.1| 145|Homo sapiens ribosomal L5 protein prot... 85 2e-16
>BC132972-1|AAI32973.1| 297|Homo sapiens ribosomal protein L5
protein.
Length = 297
Score = 144 bits (349), Expect = 3e-34
Identities = 64/81 (79%), Positives = 74/81 (91%), Gaps = 1/81 (1%)
Frame = +3
Query: 42 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 221
MGFVKVVKNK YFKRYQVKF+RRREGKTDYYARKRLV+QDKNKYNTPKYR+IVR++N+D+
Sbjct: 1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDI 60
Query: 222 TCQVAYSRIEG-TILCALLIH 281
CQ+AY+RIEG I+CA H
Sbjct: 61 ICQIAYARIEGDMIVCAAYAH 81
Score = 99.5 bits (237), Expect = 9e-21
Identities = 48/83 (57%), Positives = 51/83 (61%)
Frame = +2
Query: 260 IVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVE 439
IVCAAY+HELP+YGVKVGLTNYAAAY TG EYNVE
Sbjct: 74 IVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVEVTGDEYNVE 133
Query: 440 PVDNGPGAFRCYLDVGLARTTTG 508
+D PGAF CYLD GLARTTTG
Sbjct: 134 SIDGQPGAFTCYLDAGLARTTTG 156
Score = 85.0 bits (201), Expect = 2e-16
Identities = 35/45 (77%), Positives = 42/45 (93%)
Frame = +1
Query: 508 SRVFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFG 642
++VFGA+KGAVDGGL++PHS KRFPGYD+ESK+FNAEVHR HI G
Sbjct: 157 NKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNAEVHRKHIMG 201
>BC132970-1|AAI32971.1| 297|Homo sapiens ribosomal protein L5
protein.
Length = 297
Score = 144 bits (349), Expect = 3e-34
Identities = 64/81 (79%), Positives = 74/81 (91%), Gaps = 1/81 (1%)
Frame = +3
Query: 42 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 221
MGFVKVVKNK YFKRYQVKF+RRREGKTDYYARKRLV+QDKNKYNTPKYR+IVR++N+D+
Sbjct: 1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDI 60
Query: 222 TCQVAYSRIEG-TILCALLIH 281
CQ+AY+RIEG I+CA H
Sbjct: 61 ICQIAYARIEGDMIVCAAYAH 81
Score = 99.5 bits (237), Expect = 9e-21
Identities = 48/83 (57%), Positives = 51/83 (61%)
Frame = +2
Query: 260 IVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVE 439
IVCAAY+HELP+YGVKVGLTNYAAAY TG EYNVE
Sbjct: 74 IVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVEVTGDEYNVE 133
Query: 440 PVDNGPGAFRCYLDVGLARTTTG 508
+D PGAF CYLD GLARTTTG
Sbjct: 134 SIDGQPGAFTCYLDAGLARTTTG 156
Score = 85.0 bits (201), Expect = 2e-16
Identities = 35/45 (77%), Positives = 42/45 (93%)
Frame = +1
Query: 508 SRVFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFG 642
++VFGA+KGAVDGGL++PHS KRFPGYD+ESK+FNAEVHR HI G
Sbjct: 157 NKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNAEVHRKHIMG 201
>BC109370-1|AAI09371.1| 297|Homo sapiens ribosomal protein L5
protein.
Length = 297
Score = 144 bits (349), Expect = 3e-34
Identities = 64/81 (79%), Positives = 74/81 (91%), Gaps = 1/81 (1%)
Frame = +3
Query: 42 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 221
MGFVKVVKNK YFKRYQVKF+RRREGKTDYYARKRLV+QDKNKYNTPKYR+IVR++N+D+
Sbjct: 1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDI 60
Query: 222 TCQVAYSRIEG-TILCALLIH 281
CQ+AY+RIEG I+CA H
Sbjct: 61 ICQIAYARIEGDMIVCAAYAH 81
Score = 99.5 bits (237), Expect = 9e-21
Identities = 48/83 (57%), Positives = 51/83 (61%)
Frame = +2
Query: 260 IVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVE 439
IVCAAY+HELP+YGVKVGLTNYAAAY TG EYNVE
Sbjct: 74 IVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVEVTGDEYNVE 133
Query: 440 PVDNGPGAFRCYLDVGLARTTTG 508
+D PGAF CYLD GLARTTTG
Sbjct: 134 SIDGQPGAFTCYLDAGLARTTTG 156
Score = 85.0 bits (201), Expect = 2e-16
Identities = 35/45 (77%), Positives = 42/45 (93%)
Frame = +1
Query: 508 SRVFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFG 642
++VFGA+KGAVDGGL++PHS KRFPGYD+ESK+FNAEVHR HI G
Sbjct: 157 NKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNAEVHRKHIMG 201
>BC001882-1|AAH01882.1| 101|Homo sapiens RPL5 protein protein.
Length = 101
Score = 144 bits (349), Expect = 3e-34
Identities = 64/81 (79%), Positives = 74/81 (91%), Gaps = 1/81 (1%)
Frame = +3
Query: 42 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 221
MGFVKVVKNK YFKRYQVKF+RRREGKTDYYARKRLV+QDKNKYNTPKYR+IVR++N+D+
Sbjct: 1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDI 60
Query: 222 TCQVAYSRIEG-TILCALLIH 281
CQ+AY+RIEG I+CA H
Sbjct: 61 ICQIAYARIEGDMIVCAAYAH 81
Score = 54.4 bits (125), Expect = 4e-07
Identities = 23/25 (92%), Positives = 25/25 (100%)
Frame = +2
Query: 260 IVCAAYSHELPRYGVKVGLTNYAAA 334
IVCAAY+HELP+YGVKVGLTNYAAA
Sbjct: 74 IVCAAYAHELPKYGVKVGLTNYAAA 98
>AL162740-1|CAI22505.1| 297|Homo sapiens ribosomal protein L5
protein.
Length = 297
Score = 144 bits (349), Expect = 3e-34
Identities = 64/81 (79%), Positives = 74/81 (91%), Gaps = 1/81 (1%)
Frame = +3
Query: 42 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 221
MGFVKVVKNK YFKRYQVKF+RRREGKTDYYARKRLV+QDKNKYNTPKYR+IVR++N+D+
Sbjct: 1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDI 60
Query: 222 TCQVAYSRIEG-TILCALLIH 281
CQ+AY+RIEG I+CA H
Sbjct: 61 ICQIAYARIEGDMIVCAAYAH 81
Score = 99.5 bits (237), Expect = 9e-21
Identities = 48/83 (57%), Positives = 51/83 (61%)
Frame = +2
Query: 260 IVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVE 439
IVCAAY+HELP+YGVKVGLTNYAAAY TG EYNVE
Sbjct: 74 IVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVEVTGDEYNVE 133
Query: 440 PVDNGPGAFRCYLDVGLARTTTG 508
+D PGAF CYLD GLARTTTG
Sbjct: 134 SIDGQPGAFTCYLDAGLARTTTG 156
Score = 85.0 bits (201), Expect = 2e-16
Identities = 35/45 (77%), Positives = 42/45 (93%)
Frame = +1
Query: 508 SRVFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFG 642
++VFGA+KGAVDGGL++PHS KRFPGYD+ESK+FNAEVHR HI G
Sbjct: 157 NKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNAEVHRKHIMG 201
>AK222604-1|BAD96324.1| 297|Homo sapiens ribosomal protein L5
variant protein.
Length = 297
Score = 144 bits (349), Expect = 3e-34
Identities = 64/81 (79%), Positives = 74/81 (91%), Gaps = 1/81 (1%)
Frame = +3
Query: 42 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 221
MGFVKVVKNK YFKRYQVKF+RRREGKTDYYARKRLV+QDKNKYNTPKYR+IVR++N+D+
Sbjct: 1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDI 60
Query: 222 TCQVAYSRIEG-TILCALLIH 281
CQ+AY+RIEG I+CA H
Sbjct: 61 ICQIAYARIEGDMIVCAAYAH 81
Score = 99.5 bits (237), Expect = 9e-21
Identities = 48/83 (57%), Positives = 51/83 (61%)
Frame = +2
Query: 260 IVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVE 439
IVCAAY+HELP+YGVKVGLTNYAAAY TG EYNVE
Sbjct: 74 IVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVEVTGDEYNVE 133
Query: 440 PVDNGPGAFRCYLDVGLARTTTG 508
+D PGAF CYLD GLARTTTG
Sbjct: 134 SIDGQPGAFTCYLDAGLARTTTG 156
Score = 85.0 bits (201), Expect = 2e-16
Identities = 35/45 (77%), Positives = 42/45 (93%)
Frame = +1
Query: 508 SRVFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFG 642
++VFGA+KGAVDGGL++PHS KRFPGYD+ESK+FNAEVHR HI G
Sbjct: 157 NKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNAEVHRKHIMG 201
>AB208980-1|BAD92217.1| 303|Homo sapiens ribosomal protein L5
variant protein.
Length = 303
Score = 144 bits (349), Expect = 3e-34
Identities = 64/81 (79%), Positives = 74/81 (91%), Gaps = 1/81 (1%)
Frame = +3
Query: 42 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 221
MGFVKVVKNK YFKRYQVKF+RRREGKTDYYARKRLV+QDKNKYNTPKYR+IVR++N+D+
Sbjct: 8 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDI 67
Query: 222 TCQVAYSRIEG-TILCALLIH 281
CQ+AY+RIEG I+CA H
Sbjct: 68 ICQIAYARIEGDMIVCAAYAH 88
Score = 99.5 bits (237), Expect = 9e-21
Identities = 48/83 (57%), Positives = 51/83 (61%)
Frame = +2
Query: 260 IVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVE 439
IVCAAY+HELP+YGVKVGLTNYAAAY TG EYNVE
Sbjct: 81 IVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVEVTGDEYNVE 140
Query: 440 PVDNGPGAFRCYLDVGLARTTTG 508
+D PGAF CYLD GLARTTTG
Sbjct: 141 SIDGQPGAFTCYLDAGLARTTTG 163
Score = 85.0 bits (201), Expect = 2e-16
Identities = 35/45 (77%), Positives = 42/45 (93%)
Frame = +1
Query: 508 SRVFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFG 642
++VFGA+KGAVDGGL++PHS KRFPGYD+ESK+FNAEVHR HI G
Sbjct: 164 NKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNAEVHRKHIMG 208
>U14966-1|AAA85654.1| 297|Homo sapiens ribosomal protein L5
protein.
Length = 297
Score = 144 bits (348), Expect = 3e-34
Identities = 64/81 (79%), Positives = 74/81 (91%), Gaps = 1/81 (1%)
Frame = +3
Query: 42 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 221
MGFVKVVKNK YFKRYQVKF+RRREGKTDYYARKRLV+QDKNKYNTPKYR+IVR++N+D+
Sbjct: 1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDI 60
Query: 222 TCQVAYSRIEG-TILCALLIH 281
CQ+AY+RIEG I+CA H
Sbjct: 61 ICQIAYARIEGDMIVCARYAH 81
Score = 97.5 bits (232), Expect = 4e-20
Identities = 47/83 (56%), Positives = 50/83 (60%)
Frame = +2
Query: 260 IVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVE 439
IVCA Y+HELP+YGVKVGLTNYAAAY TG EYNVE
Sbjct: 74 IVCARYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVEVTGDEYNVE 133
Query: 440 PVDNGPGAFRCYLDVGLARTTTG 508
+D PGAF CYLD GLARTTTG
Sbjct: 134 SIDGQPGAFTCYLDAGLARTTTG 156
Score = 85.0 bits (201), Expect = 2e-16
Identities = 35/45 (77%), Positives = 42/45 (93%)
Frame = +1
Query: 508 SRVFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFG 642
++VFGA+KGAVDGGL++PHS KRFPGYD+ESK+FNAEVHR HI G
Sbjct: 157 NKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNAEVHRKHIMG 201
>AL162740-2|CAI22506.1| 126|Homo sapiens ribosomal protein L5
protein.
Length = 126
Score = 99.5 bits (237), Expect = 9e-21
Identities = 48/83 (57%), Positives = 51/83 (61%)
Frame = +2
Query: 260 IVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVE 439
IVCAAY+HELP+YGVKVGLTNYAAAY TG EYNVE
Sbjct: 24 IVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVEVTGDEYNVE 83
Query: 440 PVDNGPGAFRCYLDVGLARTTTG 508
+D PGAF CYLD GLARTTTG
Sbjct: 84 SIDGQPGAFTCYLDAGLARTTTG 106
Score = 41.5 bits (93), Expect = 0.003
Identities = 17/31 (54%), Positives = 25/31 (80%), Gaps = 1/31 (3%)
Frame = +3
Query: 192 LIVRLSNKDVTCQVAYSRIEG-TILCALLIH 281
+IVR++N+D+ CQ+AY+RIEG I+CA H
Sbjct: 1 MIVRVTNRDIICQIAYARIEGDMIVCAAYAH 31
Score = 38.3 bits (85), Expect = 0.025
Identities = 14/19 (73%), Positives = 19/19 (100%)
Frame = +1
Query: 508 SRVFGAMKGAVDGGLNVPH 564
++VFGA+KGAVDGGL++PH
Sbjct: 107 NKVFGALKGAVDGGLSIPH 125
>U76609-1|AAB18361.1| 145|Homo sapiens ribosomal L5 protein
protein.
Length = 145
Score = 85.0 bits (201), Expect = 2e-16
Identities = 35/45 (77%), Positives = 42/45 (93%)
Frame = +1
Query: 508 SRVFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFG 642
++VFGA+KGAVDGGL++PHS KRFPGYD+ESK+FNAEVHR HI G
Sbjct: 5 NKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNAEVHRKHIMG 49
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,525,711
Number of Sequences: 237096
Number of extensions: 2139714
Number of successful extensions: 3495
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3487
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7647512560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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