Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0954
         (673 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49967-5|CAA90251.1|  293|Caenorhabditis elegans Hypothetical pr...   134   4e-32
AY077614-1|AAL79358.1|  550|Caenorhabditis elegans KSR-2a protein.     28   5.3  
AL137227-4|CAB70239.2|  550|Caenorhabditis elegans Hypothetical ...    28   5.3  
Z82083-6|CAB04974.1|  388|Caenorhabditis elegans Hypothetical pr...    28   6.9  
AF067943-1|AAC17662.2|  322|Caenorhabditis elegans Serpentine re...    28   6.9  
Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical pr...    27   9.2  
Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical p...    27   9.2  

>Z49967-5|CAA90251.1|  293|Caenorhabditis elegans Hypothetical
           protein F54C9.5 protein.
          Length = 293

 Score =  134 bits (325), Expect = 4e-32
 Identities = 60/76 (78%), Positives = 68/76 (89%)
 Frame = +3

Query: 42  MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 221
           MG VKV+KNK YFKRYQVK +RRREGKTDYYARKRL VQDKNKYNTPKYRLIVR++NKDV
Sbjct: 1   MGLVKVIKNKAYFKRYQVKLRRRREGKTDYYARKRLTVQDKNKYNTPKYRLIVRITNKDV 60

Query: 222 TCQVAYSRIEGTILCA 269
             Q+AYS+IEG ++ A
Sbjct: 61  VAQLAYSKIEGDVVVA 76



 Score = 75.8 bits (178), Expect = 3e-14
 Identities = 39/83 (46%), Positives = 47/83 (56%)
 Frame = +2

Query: 260 IVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVE 439
           +V +AYSHELPRYG+KVGLTNYAAAY+TG                          +YNVE
Sbjct: 74  VVASAYSHELPRYGLKVGLTNYAAAYATGLLLARRHLKTIGLDSTYKGHEELTGEDYNVE 133

Query: 440 PVDNGPGAFRCYLDVGLARTTTG 508
             +     F+  LD+GLARTTTG
Sbjct: 134 E-EGDRAPFKAVLDIGLARTTTG 155



 Score = 65.3 bits (152), Expect = 4e-11
 Identities = 27/45 (60%), Positives = 33/45 (73%)
 Frame = +1

Query: 508 SRVFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFG 642
           S++F  MKG  DGG+NVPHS  RF G+D ESK++NAE HR  I G
Sbjct: 156 SKIFAVMKGVADGGINVPHSESRFFGFDQESKEYNAEAHRDRILG 200


>AY077614-1|AAL79358.1|  550|Caenorhabditis elegans KSR-2a protein.
          Length = 550

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = -2

Query: 603 FGFCIIARESFDGMRNIEATVNSTLHSSKDTRPVVVRAKPTSK*HLNAPGPLST 442
           F + ++   SF   R   +T  S   SS+ T      +  TS   +NAP P +T
Sbjct: 12  FRYSVLTTSSFSSWRR-SSTSGSISQSSRTTSKTTTSSSVTSSNPINAPPPTAT 64


>AL137227-4|CAB70239.2|  550|Caenorhabditis elegans Hypothetical
           protein F58D5.4a protein.
          Length = 550

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = -2

Query: 603 FGFCIIARESFDGMRNIEATVNSTLHSSKDTRPVVVRAKPTSK*HLNAPGPLST 442
           F + ++   SF   R   +T  S   SS+ T      +  TS   +NAP P +T
Sbjct: 12  FRYSVLTTSSFSSWRR-SSTSGSISQSSRTTSKTTTSSSVTSSNPINAPPPTAT 64


>Z82083-6|CAB04974.1|  388|Caenorhabditis elegans Hypothetical
           protein ZK1010.8 protein.
          Length = 388

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +1

Query: 232 WPTLGLKVPYCVRCLFT*VATLWCEG--WSDKLCCSIFNW 345
           WP  G  VP C+  + T  + LW  G  ++++L  SIF +
Sbjct: 115 WPWFGTSVPLCI--MTTAYSVLWWSGDVFNEQLTMSIFEF 152


>AF067943-1|AAC17662.2|  322|Caenorhabditis elegans Serpentine
           receptor, class x protein93 protein.
          Length = 322

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -3

Query: 257 GTFNPRVGHLACYIFVGETHNQTIFRCVIFVLVLNN 150
           GTF      L  YIF+ E   QT F  + F   ++N
Sbjct: 23  GTFGVVCNSLIVYIFLKEKSEQTAFNVICFFRAISN 58


>Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical protein
            F25H8.3 protein.
          Length = 2165

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -2

Query: 252  LQSESRPPGMLHLCWRDAQSDDI*VCYI-CS 163
            ++ + + P   HLC R+++  DI  CYI CS
Sbjct: 988  MEGDRQTPASEHLCDRNSKPSDIASCYIDCS 1018


>Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical
            protein F25H8.3 protein.
          Length = 2165

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -2

Query: 252  LQSESRPPGMLHLCWRDAQSDDI*VCYI-CS 163
            ++ + + P   HLC R+++  DI  CYI CS
Sbjct: 988  MEGDRQTPASEHLCDRNSKPSDIASCYIDCS 1018


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,605,781
Number of Sequences: 27780
Number of extensions: 325732
Number of successful extensions: 772
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 771
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)