Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0950
(680 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC777.05 |gtr2||Gtr1/RagA G protein Gtr2|Schizosaccharomyces p... 113 2e-26
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 38 0.002
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 28 1.1
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce... 27 3.3
SPCC1442.09 |trp3||anthranilate synthase component I|Schizosacch... 26 5.8
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 26 5.8
SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces po... 25 7.7
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 25 7.7
>SPCC777.05 |gtr2||Gtr1/RagA G protein Gtr2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 314
Score = 113 bits (273), Expect = 2e-26
Identities = 55/81 (67%), Positives = 66/81 (81%), Gaps = 1/81 (1%)
Frame = +3
Query: 273 KPR-ILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNQIVKDDINNSSFVQFQIWDFPG 449
KPR I+LMGLRRSGKSSIQKVVF+KM PNETLFLEST+++ +D I SSF+ F +WDFPG
Sbjct: 2 KPRKIILMGLRRSGKSSIQKVVFYKMPPNETLFLESTSKLTQDHI--SSFIDFSVWDFPG 59
Query: 450 QIDFFDPTFDSDTIFGGCGAL 512
Q+D FD FD ++IF GAL
Sbjct: 60 QVDVFDAAFDFESIFTQVGAL 80
Score = 62.5 bits (145), Expect = 5e-11
Identities = 28/44 (63%), Positives = 34/44 (77%)
Frame = +2
Query: 506 SLVFVIDAQDDYQDALDKLQLTVTKAYRVNSNIKFEVFIHKVDG 637
+L+FVIDAQDDY DAL +L +TV + +N NI EVFIHKVDG
Sbjct: 79 ALIFVIDAQDDYLDALARLHVTVARVVTINPNICIEVFIHKVDG 122
>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 308
Score = 37.5 bits (83), Expect = 0.002
Identities = 20/65 (30%), Positives = 32/65 (49%)
Frame = +3
Query: 273 KPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNQIVKDDINNSSFVQFQIWDFPGQ 452
+ ++LLMG SGKSS++ +VF +T L +T I + + +WD GQ
Sbjct: 2 RKKVLLMGRSGSGKSSMRSIVFSNYVAKDTRRLGATIDIEHSHVRFLGNLVLNLWDCGGQ 61
Query: 453 IDFFD 467
F +
Sbjct: 62 EAFME 66
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 28.3 bits (60), Expect = 1.1
Identities = 16/58 (27%), Positives = 32/58 (55%)
Frame = +3
Query: 279 RILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNQIVKDDINNSSFVQFQIWDFPGQ 452
RIL++GL +GK++I +K+ N+++ T + + + ++F +WD GQ
Sbjct: 23 RILMLGLDAAGKTTI----LYKLKLNQSVVTIPTVGFNVETVTYKN-IKFNVWDVGGQ 75
>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1242
Score = 26.6 bits (56), Expect = 3.3
Identities = 17/65 (26%), Positives = 28/65 (43%)
Frame = +3
Query: 267 DHKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNQIVKDDINNSSFVQFQIWDFP 446
DH+P I+ S + V + + N + E+ NQ+V D+ N+ QI +
Sbjct: 370 DHEPIIVNNDDENGNNESENEEVIEEDNLNRNVIAEAQNQVVADEERNAVARAAQIAEAD 429
Query: 447 GQIDF 461
DF
Sbjct: 430 DADDF 434
>SPCC1442.09 |trp3||anthranilate synthase component
I|Schizosaccharomyces pombe|chr 3|||Manual
Length = 489
Score = 25.8 bits (54), Expect = 5.8
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 509 LVFVIDAQDDYQDALDKLQLTVT 577
+VF D QD+Y + L+KL+ VT
Sbjct: 450 IVFDSDEQDEYVETLNKLRSNVT 472
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.8 bits (54), Expect = 5.8
Identities = 12/19 (63%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
Frame = +1
Query: 163 SYQD-DPNCYVGSFPKDFT 216
+Y D D N +GSFPKDFT
Sbjct: 44 TYVDSDGNRKIGSFPKDFT 62
>SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 556
Score = 25.4 bits (53), Expect = 7.7
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 9/90 (10%)
Frame = +3
Query: 300 RRSGKSSIQKVVFHKMSPNETLF-LESTNQIVKDDINNSSF-------VQFQIWDFPGQI 455
R KSS K ++ +PN T++ L I KD I+ S + +++ D PG
Sbjct: 189 RDRNKSSYGKKAQYQDNPNRTIYSLSPVRSITKDLISASRLEGRELPSIPYRVLDAPGLA 248
Query: 456 -DFFDPTFDSDTIFGGCGALSL*LMRRMII 542
DF+ D +G C L++ L R+ +
Sbjct: 249 GDFYLNLLD----WGQCNMLAVALASRVYL 274
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 25.4 bits (53), Expect = 7.7
Identities = 19/62 (30%), Positives = 34/62 (54%)
Frame = +3
Query: 267 DHKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNQIVKDDINNSSFVQFQIWDFP 446
+ + R+LL+GL +GK++I K + ++ NE + QI ++ ++F IWD
Sbjct: 14 EREVRVLLLGLDNAGKTTILKCLLNE-DVNE-VSPTFGFQIRTLEVEG---LRFTIWDIG 68
Query: 447 GQ 452
GQ
Sbjct: 69 GQ 70
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,889,639
Number of Sequences: 5004
Number of extensions: 62726
Number of successful extensions: 121
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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