Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0950
         (680 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0491 + 17749763-17750143,17750694-17750751,17750846-177508...    29   2.6  
07_03_1312 - 25699811-25699912,25700410-25700548,25700655-257007...    29   2.6  
09_06_0286 + 22040904-22040936,22041342-22041680,22041948-220421...    29   3.4  
09_04_0245 + 15995689-15995742,15995979-15996075,15996165-159961...    28   7.9  
08_01_0387 - 3426058-3426168,3426279-3426473,3426612-3426724,342...    28   7.9  

>08_02_0491 +
           17749763-17750143,17750694-17750751,17750846-17750891,
           17750932-17750998,17751100-17751108
          Length = 186

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
 Frame = -1

Query: 512 QGSTSTKYGVRIKCRIKEVYLPGKVPYLKLYKT---AVINVVFNNLICRF*KQCLIWRHL 342
           +  TS + G +     KE+    +V YL L+ +   ++ N +      ++   C+I RH+
Sbjct: 95  KNGTSVERGFQFCNSFKEIQRDQRVLYLLLHVSKAGSLFNFIVQQFALKYLSDCIIARHV 154

Query: 341 VKYNFLN 321
            K N  N
Sbjct: 155 CKVNIEN 161


>07_03_1312 -
           25699811-25699912,25700410-25700548,25700655-25700722,
           25700803-25700895,25706303-25706902
          Length = 333

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = +2

Query: 125 FVLIFVWTLPRL*VIRTIQIVMWGRSPKILPMDLSSKMEMAIVLSSR 265
           + LI    L  L +I    +++WG   K+ PM+L+ +++  +  SSR
Sbjct: 215 YALISERQLSDLPIISQPALIVWGERDKVFPMELAHRLKRHLGESSR 261


>09_06_0286 +
           22040904-22040936,22041342-22041680,22041948-22042190,
           22042285-22042434,22043659-22044045
          Length = 383

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/65 (21%), Positives = 35/65 (53%)
 Frame = +3

Query: 204 QRFYLWTFRAKWRWR*FSLQDDHKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTN 383
           + FY+W       W+  +LQD +   + +  +     ++++KV  ++  P+++L +E T 
Sbjct: 250 ETFYIWAGEYDLAWKDPALQDSNADSLQIRRIPEIHHANLKKVSINRFFPSKSL-IELTY 308

Query: 384 QIVKD 398
            I+++
Sbjct: 309 LIIEN 313


>09_04_0245 +
           15995689-15995742,15995979-15996075,15996165-15996185,
           15996442-15996573,15996707-15996834,15996919-15997203,
           15997391-15997521,15999700-15999817,16000609-16000703,
           16001437-16001511,16001860-16001911,16002767-16002859,
           16003625-16003690,16003785-16003867,16003942-16004054,
           16005271-16005410,16005569-16005643,16006084-16006160,
           16006426-16006514,16008039-16008085,16009004-16009138,
           16009298-16009345,16009605-16009667,16009709-16009730,
           16010284-16010458,16014250-16014321,16014887-16014958,
           16015904-16016005,16016197-16016225,16016333-16016403,
           16016549-16016597,16016684-16016784,16017495-16017623,
           16017683-16017752,16017975-16018194,16019368-16019389,
           16019457-16019604,16021569-16021693,16022344-16022774,
           16022984-16023110,16023241-16023292,16023351-16023502
          Length = 1461

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 22/93 (23%), Positives = 40/93 (43%)
 Frame = +3

Query: 309 GKSSIQKVVFHKMSPNETLFLESTNQIVKDDINNSSFVQFQIWDFPGQIDFFDPTFDSDT 488
           G   I  + +    P +    +S  Q+  D +   +F+Q+         D   PT   + 
Sbjct: 706 GNKQIGVIGWGSQGPAQADLRDSIAQVKSDIVVKDTFLQY--------FDAAKPTLKREI 757

Query: 489 IFGGCGALSL*LMRRMIIKMLWINYNLLSLKPT 587
           +  G GALSL + R  +++   I + L+  +PT
Sbjct: 758 VGDGSGALSLAVERDALLQEDSIVFALIKQQPT 790


>08_01_0387 -
           3426058-3426168,3426279-3426473,3426612-3426724,
           3427121-3427157,3427270-3427341,3427849-3427962,
           3428129-3428200,3428343-3428381,3429340-3429414,
           3429561-3429674,3429749-3429813,3429927-3430047,
           3430942-3431063,3431547-3431634
          Length = 445

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 19/62 (30%), Positives = 31/62 (50%)
 Frame = +3

Query: 264 DDHKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNQIVKDDINNSSFVQFQIWDF 443
           D H P + L+G    GKSS+ +++     P    +  +T  I+   I  S+  +FQ+ D 
Sbjct: 241 DPHIPTLCLVGSPNVGKSSLVRIL-SSGKPEVCSYPFTTRGILMGHI-VSNHERFQVTDT 298

Query: 444 PG 449
           PG
Sbjct: 299 PG 300


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,184,509
Number of Sequences: 37544
Number of extensions: 350708
Number of successful extensions: 652
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 652
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)