Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0950
         (680 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8258| Best HMM Match : No HMM Matches (HMM E-Value=.)               60   2e-09
SB_642| Best HMM Match : No HMM Matches (HMM E-Value=.)                35   0.070
SB_51371| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.16 
SB_37042| Best HMM Match : Arf (HMM E-Value=0)                         28   6.1  
SB_2134| Best HMM Match : Endonuclease_7 (HMM E-Value=0.057)           28   8.0  
SB_42973| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  

>SB_8258| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 456

 Score = 60.1 bits (139), Expect = 2e-09
 Identities = 23/28 (82%), Positives = 25/28 (89%)
 Frame = +3

Query: 429 QIWDFPGQIDFFDPTFDSDTIFGGCGAL 512
           +IWDFPGQIDFFDP FDS+ IFG CGAL
Sbjct: 96  EIWDFPGQIDFFDPAFDSEVIFGNCGAL 123


>SB_642| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2229

 Score = 34.7 bits (76), Expect = 0.070
 Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 7/69 (10%)
 Frame = +3

Query: 279 RILLMGLRRSGKSSIQKVVFHKMSPNETLFLES-TNQI------VKDDINNSSFVQFQIW 437
           +++L+G    GK+++     H++  + T F+ S TN I      +K D  +  F+ F+IW
Sbjct: 553 KLMLVGREAQGKTTLM----HRLMLDNTYFINSATNGISMEEFRLKKDFLHREFI-FKIW 607

Query: 438 DFPGQIDFF 464
           DF GQ D++
Sbjct: 608 DFGGQEDYY 616


>SB_51371| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1325

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 18/64 (28%), Positives = 31/64 (48%)
 Frame = +3

Query: 261 QDDHKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNQIVKDDINNSSFVQFQIWD 440
           + D + RILL+GL  SGK++I K     ++  + L +  T       + +    +  +WD
Sbjct: 13  EKDREMRILLLGLDNSGKTTILK----SLASEDVLHITPTQGFNIKSVQSKGGFRLNVWD 68

Query: 441 FPGQ 452
             GQ
Sbjct: 69  IGGQ 72


>SB_37042| Best HMM Match : Arf (HMM E-Value=0)
          Length = 188

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 19/67 (28%), Positives = 33/67 (49%)
 Frame = +3

Query: 252 FSLQDDHKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNQIVKDDINNSSFVQFQ 431
           FS   + + RI+++GL  +GK++I     +K+   ET+    T     + +  +  V   
Sbjct: 12  FSEFGNRQVRIVMLGLDAAGKTTI----LYKLKLKETVSTIPTIGFNVETLQPTKNVTLT 67

Query: 432 IWDFPGQ 452
           IWD  GQ
Sbjct: 68  IWDVGGQ 74


>SB_2134| Best HMM Match : Endonuclease_7 (HMM E-Value=0.057)
          Length = 1124

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +1

Query: 160 MSYQDDPNCYVGSFPKDF-TYGPFEQNGDGDSSLFKTI 270
           +S++DD  C +G+F K      P   + DGD+ LF  +
Sbjct: 670 LSHEDDKRCSIGAFDKSLCAMVPSLASLDGDTLLFHNL 707


>SB_42973| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1864

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -1

Query: 503  TSTKYGVRIKCRIKEVYLPGKVPYLKLYKTAVINVVFNNLIC 378
            TST+  +        V+ P  V   KL++T ++N +F +L+C
Sbjct: 888  TSTEVSLSYLYNTTIVFSPEHVHAHKLFRTVLLNHLFESLVC 929


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,616,815
Number of Sequences: 59808
Number of extensions: 435360
Number of successful extensions: 789
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)